Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 119.99690 * 2 1 4 4 H 1.48497 * 109.46840 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47072 * 299.99726 * 3 2 1 6 6 H 1.48504 * 109.47143 * 59.99753 * 3 2 1 7 7 C 1.39946 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00116 * 163.56740 * 7 2 1 9 9 C 1.41402 * 119.99929 * 343.57195 * 7 2 1 10 10 C 1.40732 * 120.24273 * 334.13375 * 9 7 2 11 11 C 1.37594 * 119.74554 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24927 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.49744 * 359.72659 * 12 11 10 14 14 C 1.37637 * 120.24761 * 0.55022 * 13 12 11 15 15 C 1.50696 * 120.12952 * 179.72340 * 14 13 12 16 16 H 1.08994 * 112.74768 * 228.46060 * 15 14 13 17 17 C 1.53705 * 113.53629 * 97.63043 * 15 14 13 18 18 C 1.53511 * 83.51253 * 219.20641 * 17 15 14 19 19 N 1.47475 * 87.99533 * 26.02463 * 18 17 15 20 20 H 0.96995 * 120.00377 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.13168 * 0.04695 * 10 9 7 22 22 H 1.08003 * 119.87605 * 179.97438 * 11 10 9 23 23 H 1.07994 * 119.74957 * 180.02562 * 12 11 10 24 24 H 1.07991 * 119.87369 * 180.29863 * 13 12 11 25 25 H 1.09006 * 114.22088 * 105.58617 * 17 15 14 26 26 H 1.08994 * 114.16990 * 332.82812 * 17 15 14 27 27 H 1.08999 * 113.48073 * 271.22586 * 18 17 15 28 28 H 1.09007 * 113.47329 * 140.82150 * 18 17 15 29 29 H 1.00908 * 110.99970 * 84.65409 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8833 2.3965 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0550 -1.2311 -0.2640 9 6 1.3444 -2.4114 0.3474 10 6 0.2135 -2.3792 1.1844 11 6 -0.4241 -3.5526 1.5159 12 6 0.0440 -4.7636 1.0289 13 6 1.1539 -4.8067 0.1995 14 6 1.8108 -3.6459 -0.1405 15 6 3.0208 -3.6964 -1.0372 16 1 3.8602 -3.1221 -0.6452 17 6 2.7060 -3.3926 -2.5107 18 6 3.7247 -4.5096 -2.7777 19 7 3.3872 -5.0631 -1.4531 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1527 -1.4371 1.5650 22 1 -1.2919 -3.5304 2.1584 23 1 -0.4629 -5.6797 1.2938 24 1 1.5069 -5.7549 -0.1779 25 1 3.0286 -2.4057 -2.8426 26 1 1.6867 -3.6376 -2.8089 27 1 4.7519 -4.1523 -2.8502 28 1 3.4462 -5.1625 -3.6050 29 1 2.5722 -5.6558 -1.5058 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104580618.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = 50.849637 kcal Electronic energy + Delta-G solvation = -12817.998884 eV Core-core repulsion = 10706.562789 eV Total energy + Delta-G solvation = -2111.436095 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.42776 -36.88382 -33.64754 -30.25061 -29.41163 -26.53965 -25.56983 -24.27408 -21.12226 -20.35282 -19.18954 -17.35958 -15.87048 -15.13571 -14.45559 -14.10161 -13.70873 -13.24350 -12.69103 -12.37574 -12.20042 -11.98058 -11.51778 -11.29377 -11.09481 -10.73685 -10.56498 -10.33594 -10.20542 -9.49609 -9.25733 -9.15953 -8.07189 -7.38195 -7.31617 -6.76336 -4.36815 2.75532 2.95646 3.06613 3.11531 3.21559 3.91985 4.62228 4.78002 5.21253 5.43181 5.67716 5.89483 6.09815 6.21589 6.26194 6.39114 6.45720 6.50501 6.60201 6.73428 6.89995 7.09731 7.24792 7.38165 7.59489 7.82197 7.88831 8.04944 8.08278 8.27857 8.61067 8.88134 8.95610 10.18128 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.014219 C = 0.009988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.899010 B = 1968.692534 C = 2802.666876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.121 3.879 10 C -0.162 4.162 11 C -0.108 4.108 12 C -0.240 4.240 13 C -0.090 4.090 14 C -0.201 4.201 15 C 0.119 3.881 16 H 0.098 0.902 17 C -0.172 4.172 18 C 0.006 3.994 19 N -0.658 5.658 20 H 0.279 0.721 21 H 0.118 0.882 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -1.923 -2.740 4.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.118 3.882 10 C -0.181 4.181 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.108 4.108 14 C -0.203 4.203 15 C 0.010 3.990 16 H 0.116 0.884 17 C -0.211 4.211 18 C -0.125 4.125 19 N -0.287 5.287 20 H 0.090 0.910 21 H 0.136 0.864 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.188 -2.010 -2.353 4.443 hybrid contribution -0.723 1.104 -0.503 1.413 sum 2.464 -0.906 -2.856 3.880 Atomic orbital electron populations 1.69827 1.07541 1.29015 1.35688 1.25887 0.94694 1.01201 0.92324 0.86325 0.81069 0.81205 0.78543 1.18372 1.20054 1.19747 1.19557 0.97503 0.90878 1.40777 0.90315 1.17360 0.91130 0.91352 0.88328 1.21322 0.99160 0.96723 1.00908 1.20701 0.98630 0.93449 0.99843 1.20337 1.01501 0.96208 1.07857 1.20279 0.95884 0.95984 0.98670 1.19623 1.00421 0.94047 1.06189 1.21525 0.95863 0.88789 0.92833 0.88378 1.24277 0.99181 0.99581 0.98057 1.23417 0.99766 0.96383 0.92913 1.65788 1.36670 1.11494 1.14707 0.91003 0.86439 0.89531 0.89586 0.89131 0.91321 0.90224 0.89364 0.92323 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.29 10.97 55.55 0.61 -19.69 15 2 C 0.08 1.88 5.16 -17.34 -0.09 1.79 15 3 Si 0.90 18.45 29.59 -169.99 -5.03 13.42 15 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 6 H -0.27 -5.50 7.11 56.52 0.40 -5.09 15 7 C -0.46 -11.74 8.49 -37.74 -0.32 -12.06 15 8 H 0.08 1.95 6.76 -52.49 -0.35 1.60 15 9 C 0.12 3.16 5.56 -106.82 -0.59 2.57 15 10 C -0.16 -4.21 8.69 -38.87 -0.34 -4.55 15 11 C -0.11 -2.57 10.02 -39.66 -0.40 -2.96 15 12 C -0.24 -5.45 10.05 -39.28 -0.39 -5.84 15 13 C -0.09 -2.02 9.23 -39.66 -0.37 -2.39 15 14 C -0.20 -4.78 5.42 -103.92 -0.56 -5.34 15 15 C 0.12 2.48 3.44 -72.49 -0.25 2.23 15 16 H 0.10 2.11 7.36 -51.93 -0.38 1.72 15 17 C -0.17 -3.21 7.97 -26.10 -0.21 -3.41 15 18 C 0.01 0.09 8.61 -7.55 -0.06 0.02 15 19 N -0.66 -12.09 8.42 -116.49 -0.98 -13.07 15 20 H 0.28 6.49 8.30 -40.82 -0.34 6.15 15 21 H 0.12 3.15 6.21 -52.48 -0.33 2.82 15 22 H 0.09 1.84 8.06 -52.48 -0.42 1.42 15 23 H 0.09 1.74 8.06 -52.49 -0.42 1.31 15 24 H 0.09 1.82 6.07 -52.49 -0.32 1.50 15 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.08 1.54 8.12 -51.93 -0.42 1.12 15 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 29 H 0.33 5.93 6.36 -39.29 -0.25 5.68 15 LS Contribution 242.64 15.07 3.66 3.66 Total: -1.00 -26.65 242.64 -8.63 -35.28 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -3.30 Total: 10.35 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -3.59 Total: -29.95 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: -0.37 Total: -32.75 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.65 -8.63 -35.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104580618.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.129 kcal (2) G-P(sol) polarization free energy of solvation -26.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds