Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 119.99690 * 2 1 4 4 H 1.48497 * 109.46840 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47072 * 299.99726 * 3 2 1 6 6 H 1.48504 * 109.47143 * 59.99753 * 3 2 1 7 7 C 1.39946 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00116 * 163.56740 * 7 2 1 9 9 C 1.41402 * 119.99929 * 343.57195 * 7 2 1 10 10 C 1.40732 * 120.24273 * 334.13375 * 9 7 2 11 11 C 1.37594 * 119.74554 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24927 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.49744 * 359.72659 * 12 11 10 14 14 C 1.37637 * 120.24761 * 0.55022 * 13 12 11 15 15 C 1.50696 * 120.12952 * 179.72340 * 14 13 12 16 16 H 1.08994 * 112.74768 * 228.46060 * 15 14 13 17 17 C 1.53705 * 113.53629 * 97.63043 * 15 14 13 18 18 C 1.53511 * 83.51253 * 219.20641 * 17 15 14 19 19 N 1.47475 * 87.99533 * 26.02463 * 18 17 15 20 20 H 0.96995 * 120.00377 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.13168 * 0.04695 * 10 9 7 22 22 H 1.08003 * 119.87605 * 179.97438 * 11 10 9 23 23 H 1.07994 * 119.74957 * 180.02562 * 12 11 10 24 24 H 1.07991 * 119.87369 * 180.29863 * 13 12 11 25 25 H 1.09006 * 114.22088 * 105.58617 * 17 15 14 26 26 H 1.08994 * 114.16990 * 332.82812 * 17 15 14 27 27 H 1.08999 * 113.48073 * 271.22586 * 18 17 15 28 28 H 1.09007 * 113.47329 * 140.82150 * 18 17 15 29 29 H 1.00908 * 110.99970 * 84.65409 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3464 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8833 2.3965 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0550 -1.2311 -0.2640 9 6 1.3444 -2.4114 0.3474 10 6 0.2135 -2.3792 1.1844 11 6 -0.4241 -3.5526 1.5159 12 6 0.0440 -4.7636 1.0289 13 6 1.1539 -4.8067 0.1995 14 6 1.8108 -3.6459 -0.1405 15 6 3.0208 -3.6964 -1.0372 16 1 3.8602 -3.1221 -0.6452 17 6 2.7060 -3.3926 -2.5107 18 6 3.7247 -4.5096 -2.7777 19 7 3.3872 -5.0631 -1.4531 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1527 -1.4371 1.5650 22 1 -1.2919 -3.5304 2.1584 23 1 -0.4629 -5.6797 1.2938 24 1 1.5069 -5.7549 -0.1779 25 1 3.0286 -2.4057 -2.8426 26 1 1.6867 -3.6376 -2.8089 27 1 4.7519 -4.1523 -2.8502 28 1 3.4462 -5.1625 -3.6050 29 1 2.5722 -5.6558 -1.5058 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104580618.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = 34.586684 kcal Electronic energy + Delta-G solvation = -12818.704098 eV Core-core repulsion = 10706.562789 eV Total energy + Delta-G solvation = -2112.141309 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.99881 -38.63920 -35.50602 -32.06304 -31.24812 -28.02750 -27.39071 -25.91271 -22.90048 -22.03718 -20.83009 -19.21059 -17.59924 -16.84104 -16.01859 -15.79908 -15.40127 -14.96363 -14.42072 -13.98246 -13.79902 -13.55173 -13.22017 -13.07372 -12.77293 -12.48317 -12.26422 -11.95275 -11.76975 -11.27120 -11.05070 -10.95383 -9.56936 -9.27982 -9.13054 -8.60498 -6.29918 0.97045 1.09733 1.38749 1.51221 1.53180 2.21106 2.76673 3.31734 3.65262 3.91934 3.97856 4.39174 4.49325 4.60230 4.71704 4.80449 4.88777 4.97559 5.04677 5.08174 5.19937 5.34446 5.41372 5.54662 5.73855 6.02804 6.13228 6.19428 6.38025 6.46138 6.71726 6.98242 7.06691 8.36334 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.014219 C = 0.009988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.899010 B = 1968.692534 C = 2802.666876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.975 3.025 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.483 4.483 8 H 0.078 0.922 9 C 0.090 3.910 10 C -0.192 4.192 11 C -0.116 4.116 12 C -0.240 4.240 13 C -0.095 4.095 14 C -0.209 4.209 15 C 0.112 3.888 16 H 0.087 0.913 17 C -0.172 4.172 18 C 0.022 3.978 19 N -0.658 5.658 20 H 0.285 0.715 21 H 0.099 0.901 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -2.662 -3.516 5.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.512 4.512 8 H 0.096 0.904 9 C 0.087 3.913 10 C -0.212 4.212 11 C -0.134 4.134 12 C -0.259 4.259 13 C -0.114 4.114 14 C -0.210 4.210 15 C 0.002 3.998 16 H 0.105 0.895 17 C -0.210 4.210 18 C -0.108 4.108 19 N -0.287 5.287 20 H 0.096 0.904 21 H 0.117 0.883 22 H 0.125 0.875 23 H 0.134 0.866 24 H 0.136 0.864 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.012 -2.770 -3.132 5.794 hybrid contribution -1.020 1.223 -0.252 1.612 sum 2.992 -1.546 -3.384 4.775 Atomic orbital electron populations 1.69888 1.08951 1.30207 1.36406 1.26694 0.95399 1.04312 0.91476 0.85262 0.79625 0.76743 0.78763 1.18048 1.19204 1.19266 1.19730 0.97591 0.91784 1.42131 0.90425 1.17731 0.91769 0.92712 0.89083 1.21327 1.00476 0.96923 1.02463 1.20975 0.99120 0.93291 1.00025 1.20741 1.01386 0.96877 1.06946 1.20645 0.95670 0.96791 0.98275 1.20027 1.01302 0.93717 1.06003 1.21487 0.94366 0.90495 0.93414 0.89538 1.24218 0.99589 1.00717 0.96506 1.23452 0.99677 0.95087 0.92576 1.65761 1.36557 1.10086 1.16289 0.90401 0.88294 0.87535 0.86558 0.86362 0.91606 0.91315 0.87824 0.89470 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.33 10.97 21.83 0.24 -43.09 15 2 C 0.04 1.77 5.16 85.26 0.44 2.21 15 3 Si 0.97 38.11 29.59 68.60 2.03 40.14 15 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 15 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 15 6 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 7 C -0.48 -25.37 8.49 23.46 0.20 -25.17 15 8 H 0.08 3.94 6.76 -2.91 -0.02 3.92 15 9 C 0.09 4.79 5.56 -21.29 -0.12 4.67 15 10 C -0.19 -10.28 8.69 22.73 0.20 -10.09 15 11 C -0.12 -5.50 10.02 22.22 0.22 -5.27 15 12 C -0.24 -10.54 10.05 22.46 0.23 -10.31 15 13 C -0.10 -4.17 9.23 22.22 0.21 -3.97 15 14 C -0.21 -9.90 5.42 -19.41 -0.11 -10.00 15 15 C 0.11 4.58 3.44 41.51 0.14 4.72 15 16 H 0.09 3.71 7.36 -2.39 -0.02 3.70 15 17 C -0.17 -6.18 7.97 31.00 0.25 -5.93 15 18 C 0.02 0.63 8.61 83.58 0.72 1.35 15 19 N -0.66 -22.61 8.42 -522.46 -4.40 -27.01 15 20 H 0.29 13.55 8.30 -92.71 -0.77 12.78 15 21 H 0.10 5.54 6.21 -2.91 -0.02 5.52 15 22 H 0.11 4.48 8.06 -2.91 -0.02 4.45 15 23 H 0.12 4.34 8.06 -2.91 -0.02 4.31 15 24 H 0.12 4.43 6.07 -2.92 -0.02 4.42 15 25 H 0.07 2.37 8.14 -2.38 -0.02 2.35 15 26 H 0.07 2.61 8.12 -2.39 -0.02 2.59 15 27 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 28 H 0.09 2.06 8.14 -2.38 -0.02 2.04 15 29 H 0.34 11.06 6.36 -89.69 -0.57 10.49 15 Total: -1.00 -57.21 242.64 0.83 -56.38 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.58 Total: 31.38 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 2.38 Total: -57.79 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -4.16 Total: -70.10 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -57.21 0.83 -56.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104580618.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.964 kcal (2) G-P(sol) polarization free energy of solvation -57.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds