Wall clock time and date at job start Mon Mar 30 2020 02:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39459 * 119.73547 * 260.28042 * 3 2 1 5 5 C 1.38497 * 119.05112 * 179.73318 * 4 3 2 6 6 C 1.38695 * 118.50305 * 0.52950 * 5 4 3 7 7 C 1.38471 * 119.38444 * 359.73481 * 6 5 4 8 8 C 1.50700 * 119.54303 * 180.02562 * 7 6 5 9 9 H 1.08992 * 109.46896 * 244.97391 * 8 7 6 10 10 N 1.46897 * 109.47227 * 4.97908 * 8 7 6 11 11 C 1.50704 * 109.46914 * 124.97440 * 8 7 6 12 12 H 1.07997 * 120.00111 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99533 * 179.97438 * 11 8 7 14 14 N 1.31504 * 120.00338 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99450 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47104 * 90.00341 * 15 13 11 17 17 H 1.48502 * 109.46743 * 210.00433 * 15 13 11 18 18 H 1.48503 * 109.47289 * 330.00222 * 15 13 11 19 19 N 1.31586 * 120.91287 * 359.97438 * 7 6 5 20 20 H 1.07997 * 120.47563 * 0.02562 * 4 3 2 21 21 H 1.07997 * 120.74869 * 180.24192 * 5 4 3 22 22 H 1.08000 * 120.31069 * 179.70572 * 6 5 4 23 23 H 1.00897 * 111.00481 * 59.99469 * 10 8 7 24 24 H 1.00897 * 111.00170 * 183.95835 * 10 8 7 25 25 H 0.97000 * 120.00098 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2596 0.2054 1.1936 5 6 4.6445 0.1977 1.1782 6 6 5.2918 -0.0034 -0.0318 7 6 4.5419 -0.1947 -1.1800 8 6 5.2416 -0.4141 -2.4965 9 1 5.0253 0.4183 -3.1660 10 7 6.6910 -0.4987 -2.2727 11 6 4.7535 -1.6978 -3.1170 12 1 4.0106 -2.2948 -2.6091 13 6 5.2547 -2.1095 -4.3338 14 7 6.1589 -1.3823 -4.9526 15 14 4.6491 -3.7003 -5.1032 16 1 3.4726 -3.4174 -5.9640 17 1 5.7326 -4.2961 -5.9257 18 1 4.2609 -4.6522 -4.0315 19 7 3.2267 -0.1886 -1.1373 20 1 2.7230 0.3630 2.1175 21 1 5.2076 0.3495 2.0872 22 1 6.3708 -0.0102 -0.0781 23 1 6.9174 -1.2633 -1.6546 24 1 7.1877 -0.5811 -3.1470 25 1 6.5117 -1.6721 -5.8084 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104672553.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:32 Heat of formation + Delta-G solvation = 64.752636 kcal Electronic energy + Delta-G solvation = -12079.182116 eV Core-core repulsion = 9864.808557 eV Total energy + Delta-G solvation = -2214.373559 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.90858 -36.37501 -34.85309 -32.21799 -31.86067 -29.88618 -26.25073 -24.19272 -23.70402 -20.89826 -18.38148 -16.70461 -16.22959 -15.65506 -14.87676 -14.34687 -14.10302 -13.53652 -12.98618 -12.87397 -12.58374 -12.44458 -12.23320 -11.58345 -11.34053 -10.93427 -10.87978 -10.09226 -10.05094 -9.50634 -8.96332 -8.76416 -8.38341 -7.40101 -6.15804 -4.27999 1.02828 1.65922 2.78570 3.19361 3.23563 3.30545 3.34919 3.88642 4.27571 4.41506 4.95610 5.13140 5.20889 5.38105 5.45192 5.84370 6.09514 6.31499 6.51081 6.61433 7.04077 7.38304 7.61089 7.73389 7.96294 8.33951 8.62776 8.82737 8.94532 9.42000 10.84961 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.010489 C = 0.008495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.815172 B = 2668.699710 C = 3295.380645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.282 3.718 3 C 0.174 3.826 4 C -0.148 4.148 5 C -0.086 4.086 6 C -0.136 4.136 7 C 0.181 3.819 8 C 0.250 3.750 9 H 0.065 0.935 10 N -0.851 5.851 11 C -0.533 4.533 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.896 5.896 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.440 5.440 20 H 0.133 0.867 21 H 0.137 0.863 22 H 0.153 0.847 23 H 0.314 0.686 24 H 0.363 0.637 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 1.969 9.852 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.035 4.035 3 C 0.035 3.965 4 C -0.171 4.171 5 C -0.112 4.112 6 C -0.157 4.157 7 C 0.041 3.959 8 C 0.140 3.860 9 H 0.082 0.918 10 N -0.382 5.382 11 C -0.573 4.573 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.536 5.536 15 Si 0.728 3.272 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.150 5.150 20 H 0.151 0.849 21 H 0.154 0.846 22 H 0.171 0.829 23 H 0.123 0.877 24 H 0.181 0.819 25 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.095 2.596 9.205 9.626 hybrid contribution 0.409 -1.725 -0.246 1.790 sum -0.686 0.871 8.959 9.027 Atomic orbital electron populations 1.81156 1.11791 1.08534 1.07821 1.25226 0.91953 0.93380 0.92899 1.16421 0.85919 1.03096 0.91029 1.21775 0.95206 1.02533 0.97592 1.21514 0.93535 0.97445 0.98678 1.22457 1.03176 0.97826 0.92208 1.22070 0.87302 0.89022 0.97541 1.17877 0.85128 0.97418 0.85620 0.91759 1.59471 1.08638 1.48985 1.21128 1.21686 1.23949 1.06612 1.05030 0.92210 1.24984 0.94843 0.97420 0.96420 1.69709 1.29123 1.38144 1.16578 0.86461 0.78494 0.83050 0.79237 1.20457 1.21163 1.19928 1.67417 1.11098 1.10357 1.26158 0.84909 0.84551 0.82927 0.87652 0.81927 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.61 18.54 41.83 0.78 -6.83 15 2 C 0.28 4.92 15.53 -22.47 -0.35 4.57 15 3 C 0.17 3.00 6.58 -85.07 -0.56 2.44 15 4 C -0.15 -1.99 9.80 -39.03 -0.38 -2.37 15 5 C -0.09 -1.11 10.17 -39.32 -0.40 -1.51 15 6 C -0.14 -2.19 9.20 -39.33 -0.36 -2.55 15 7 C 0.18 3.68 6.11 -82.61 -0.51 3.18 15 8 C 0.25 5.89 3.19 -70.02 -0.22 5.66 15 9 H 0.06 1.70 8.14 -51.93 -0.42 1.28 15 10 N -0.85 -18.01 7.94 -6.65 -0.05 -18.06 15 11 C -0.53 -13.96 8.52 -34.44 -0.29 -14.26 15 12 H 0.06 1.63 7.68 -52.49 -0.40 1.23 15 13 C 0.07 1.72 5.38 -17.82 -0.10 1.63 15 14 N -0.90 -23.82 11.54 55.43 0.64 -23.18 15 15 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 19 N -0.44 -9.14 9.87 -7.40 -0.07 -9.22 15 20 H 0.13 1.35 8.06 -52.49 -0.42 0.92 15 21 H 0.14 1.23 8.06 -52.49 -0.42 0.81 15 22 H 0.15 2.28 6.63 -52.49 -0.35 1.94 15 23 H 0.31 6.21 8.26 -39.29 -0.32 5.88 15 24 H 0.36 8.41 7.08 -39.29 -0.28 8.13 15 25 H 0.27 6.80 8.31 -40.82 -0.34 6.47 15 LS Contribution 235.43 15.07 3.55 3.55 Total: -1.00 -27.58 235.43 -5.11 -32.69 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -1.76 Total: 8.38 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.17 Total: -3.21 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 1.29 Total: -57.28 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.58 -5.11 -32.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104672553.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.446 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds