Wall clock time and date at job start Mon Mar 30 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37969 * 126.52535 * 2 1 4 4 C 1.40212 * 125.30596 * 0.02562 * 3 2 1 5 5 H 1.08002 * 119.99653 * 359.71141 * 4 3 2 6 6 C 1.40347 * 119.99744 * 179.97438 * 4 3 2 7 7 N 1.30584 * 120.00218 * 359.71971 * 6 4 3 8 8 Si 1.86801 * 119.99687 * 179.72168 * 6 4 3 9 9 H 1.48504 * 109.47209 * 90.00041 * 8 6 4 10 10 H 1.48506 * 109.47294 * 209.99889 * 8 6 4 11 11 H 1.48501 * 109.47275 * 329.99792 * 8 6 4 12 12 N 1.32495 * 109.38898 * 179.75336 * 3 2 1 13 13 C 1.33827 * 109.74400 * 0.24408 * 12 3 2 14 14 C 1.40355 * 134.08865 * 179.97438 * 13 12 3 15 15 N 1.31470 * 120.19051 * 179.97438 * 14 13 12 16 16 C 1.32392 * 122.47427 * 0.04816 * 15 14 13 17 17 C 1.37928 * 121.40882 * 359.95316 * 16 15 14 18 18 C 1.37412 * 126.52576 * 180.17329 * 2 1 3 19 19 H 1.09010 * 109.47163 * 90.02550 * 1 2 3 20 20 H 1.09004 * 109.47271 * 210.02085 * 1 2 3 21 21 H 1.08994 * 109.47470 * 330.02612 * 1 2 3 22 22 H 0.97004 * 119.99597 * 180.02562 * 7 6 4 23 23 H 1.08001 * 119.91150 * 0.02562 * 14 13 12 24 24 H 1.08007 * 119.29715 * 179.97438 * 16 15 14 25 25 H 1.07993 * 120.55579 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2861 1.1087 0.0000 4 6 1.8489 2.4409 0.0005 5 1 0.7918 2.6623 -0.0038 6 6 2.7850 3.4866 0.0010 7 7 4.0631 3.2189 0.0065 8 14 2.2025 5.2615 -0.0062 9 1 2.0430 5.7358 1.3920 10 1 3.2028 6.1080 -0.7049 11 1 0.8987 5.3518 -0.7113 12 7 3.5522 0.7183 0.0054 13 6 3.6131 -0.6186 0.0037 14 6 4.6646 -1.5482 0.0068 15 7 4.4073 -2.8375 0.0042 16 6 3.1728 -3.3159 -0.0021 17 6 2.0772 -2.4780 -0.0056 18 6 2.2828 -1.1042 -0.0033 19 1 -0.3634 -0.0005 -1.0278 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8901 0.5134 22 1 4.7100 3.9417 0.0072 23 1 5.6882 -1.2036 0.0121 24 1 3.0204 -4.3852 -0.0044 25 1 1.0762 -2.8832 -0.0112 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107288913.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:48 Heat of formation + Delta-G solvation = 71.874436 kcal Electronic energy + Delta-G solvation = -12465.858225 eV Core-core repulsion = 10251.793491 eV Total energy + Delta-G solvation = -2214.064735 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.62383 -37.15488 -33.79948 -32.78361 -30.36924 -28.91704 -26.34830 -26.06653 -21.96883 -21.37268 -19.85151 -17.15825 -16.49586 -16.08352 -14.76380 -14.63748 -14.53856 -13.44296 -13.32078 -12.76130 -12.71881 -12.08284 -11.64736 -11.61842 -11.16277 -11.08282 -10.77351 -10.44564 -9.62179 -9.19769 -8.66575 -8.06216 -7.75183 -7.07418 -6.79460 -4.77491 2.00853 2.65202 2.93337 2.96152 3.00197 3.69114 3.96452 4.04027 4.90954 5.38874 5.46176 5.52054 5.53562 5.82710 5.93750 6.01617 6.13824 6.34142 6.65149 6.79962 6.85307 7.24237 7.54295 7.65638 7.76651 8.07094 8.48478 8.83206 9.13643 9.77301 10.09373 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.054388 B = 0.010653 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.696289 B = 2627.696868 C = 3127.240655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.539 5.539 3 C 0.415 3.585 4 C -0.435 4.435 5 H 0.090 0.910 6 C 0.075 3.925 7 N -0.712 5.712 8 Si 0.922 3.078 9 H -0.267 1.267 10 H -0.273 1.273 11 H -0.261 1.261 12 N -0.525 5.525 13 C 0.065 3.935 14 C 0.085 3.915 15 N -0.487 5.487 16 C 0.015 3.985 17 C -0.154 4.154 18 C 0.022 3.978 19 H 0.052 0.948 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.282 0.718 23 H 0.144 0.856 24 H 0.136 0.864 25 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 -0.898 0.060 5.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.236 5.236 3 C 0.180 3.820 4 C -0.472 4.472 5 H 0.108 0.892 6 C -0.153 4.153 7 N -0.333 5.333 8 Si 0.745 3.255 9 H -0.192 1.192 10 H -0.198 1.198 11 H -0.185 1.185 12 N -0.249 5.249 13 C -0.066 4.066 14 C -0.081 4.081 15 N -0.197 5.197 16 C -0.139 4.139 17 C -0.178 4.178 18 C -0.093 4.093 19 H 0.071 0.929 20 H 0.081 0.919 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.162 0.838 24 H 0.154 0.846 25 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.323 -0.866 0.066 4.409 hybrid contribution -1.884 0.799 -0.023 2.046 sum -6.207 -0.066 0.043 6.207 Atomic orbital electron populations 1.21483 0.78793 1.02549 1.01352 1.45385 1.05399 1.05364 1.67460 1.20599 0.83218 0.87473 0.90743 1.18564 0.94900 0.86612 1.47104 0.89224 1.25906 0.94386 1.01578 0.93472 1.69960 1.01587 1.34671 1.27081 0.86090 0.79699 0.80278 0.79414 1.19153 1.19752 1.18456 1.71347 1.15893 1.05555 1.32123 1.20642 0.91995 0.93667 1.00283 1.21673 0.97188 0.86337 1.02882 1.67263 1.23418 1.15286 1.13780 1.21676 0.87331 0.98294 1.06612 1.20548 0.99384 0.90028 1.07856 1.18977 0.93075 0.89213 1.08038 0.92913 0.91949 0.90378 0.90669 0.83832 0.84621 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.94 59.84 0.65 2.43 15 2 N -0.54 -12.68 3.24 -120.81 -0.39 -13.07 15 3 C 0.42 11.09 7.41 -155.53 -1.15 9.93 15 4 C -0.43 -10.86 8.99 -38.05 -0.34 -11.20 15 5 H 0.09 2.00 7.10 -52.49 -0.37 1.63 15 6 C 0.07 1.80 5.50 -17.29 -0.10 1.70 15 7 N -0.71 -18.46 11.85 55.57 0.66 -17.80 15 8 Si 0.92 17.34 29.56 -169.99 -5.03 12.32 15 9 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 10 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 11 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 12 N -0.53 -14.98 9.33 -10.27 -0.10 -15.08 15 13 C 0.06 1.71 7.25 -84.91 -0.62 1.09 15 14 C 0.09 2.05 11.30 -16.91 -0.19 1.86 15 15 N -0.49 -10.96 10.32 -12.75 -0.13 -11.09 15 16 C 0.01 0.30 11.16 -17.42 -0.19 0.11 15 17 C -0.15 -3.19 10.12 -39.45 -0.40 -3.59 15 18 C 0.02 0.54 6.92 -83.82 -0.58 -0.04 15 19 H 0.05 0.84 8.14 -51.92 -0.42 0.41 15 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.08 1.26 7.32 -51.93 -0.38 0.88 15 22 H 0.28 6.55 8.29 -40.82 -0.34 6.22 15 23 H 0.14 3.19 8.06 -52.49 -0.42 2.77 15 24 H 0.14 2.26 8.06 -52.48 -0.42 1.83 15 25 H 0.11 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 228.42 15.07 3.44 3.44 Total: -1.00 -30.39 228.42 -6.46 -36.85 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -2.00 Total: 2.14 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.92 Total: 2.29 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.04 Total: -57.04 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.39 -6.46 -36.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107288913.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.726 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds