Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37969 * 126.52535 * 2 1 4 4 C 1.40212 * 125.30596 * 0.02562 * 3 2 1 5 5 H 1.08002 * 119.99653 * 359.71141 * 4 3 2 6 6 C 1.40347 * 119.99744 * 179.97438 * 4 3 2 7 7 N 1.30584 * 120.00218 * 359.71971 * 6 4 3 8 8 Si 1.86801 * 119.99687 * 179.72168 * 6 4 3 9 9 H 1.48504 * 109.47209 * 90.00041 * 8 6 4 10 10 H 1.48506 * 109.47294 * 209.99889 * 8 6 4 11 11 H 1.48501 * 109.47275 * 329.99792 * 8 6 4 12 12 N 1.32495 * 109.38898 * 179.75336 * 3 2 1 13 13 C 1.33827 * 109.74400 * 0.24408 * 12 3 2 14 14 C 1.40355 * 134.08865 * 179.97438 * 13 12 3 15 15 N 1.31470 * 120.19051 * 179.97438 * 14 13 12 16 16 C 1.32392 * 122.47427 * 0.04816 * 15 14 13 17 17 C 1.37928 * 121.40882 * 359.95316 * 16 15 14 18 18 C 1.37412 * 126.52576 * 180.17329 * 2 1 3 19 19 H 1.09010 * 109.47163 * 90.02550 * 1 2 3 20 20 H 1.09004 * 109.47271 * 210.02085 * 1 2 3 21 21 H 1.08994 * 109.47470 * 330.02612 * 1 2 3 22 22 H 0.97004 * 119.99597 * 180.02562 * 7 6 4 23 23 H 1.08001 * 119.91150 * 0.02562 * 14 13 12 24 24 H 1.08007 * 119.29715 * 179.97438 * 16 15 14 25 25 H 1.07993 * 120.55579 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2861 1.1087 0.0000 4 6 1.8489 2.4409 0.0005 5 1 0.7918 2.6623 -0.0038 6 6 2.7850 3.4866 0.0010 7 7 4.0631 3.2189 0.0065 8 14 2.2025 5.2615 -0.0062 9 1 2.0430 5.7358 1.3920 10 1 3.2028 6.1080 -0.7049 11 1 0.8987 5.3518 -0.7113 12 7 3.5522 0.7183 0.0054 13 6 3.6131 -0.6186 0.0037 14 6 4.6646 -1.5482 0.0068 15 7 4.4073 -2.8375 0.0042 16 6 3.1728 -3.3159 -0.0021 17 6 2.0772 -2.4780 -0.0056 18 6 2.2828 -1.1042 -0.0033 19 1 -0.3634 -0.0005 -1.0278 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8901 0.5134 22 1 4.7100 3.9417 0.0072 23 1 5.6882 -1.2036 0.0121 24 1 3.0204 -4.3852 -0.0044 25 1 1.0762 -2.8832 -0.0112 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107288913.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = 52.141090 kcal Electronic energy + Delta-G solvation = -12466.713927 eV Core-core repulsion = 10251.793491 eV Total energy + Delta-G solvation = -2214.920437 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.41394 -38.90368 -35.58629 -34.52695 -32.09663 -30.71092 -28.18177 -27.62212 -23.76224 -23.12885 -21.63853 -18.96076 -18.21508 -17.82443 -16.43051 -16.33294 -16.26704 -15.08732 -14.96600 -14.43934 -14.31317 -13.54927 -13.32969 -13.26573 -12.72716 -12.68451 -12.54288 -11.95429 -11.32606 -10.97915 -10.45404 -9.92598 -9.55514 -8.85896 -8.56734 -6.67065 0.23951 0.87257 1.42411 1.45640 1.59266 2.10862 2.26984 2.33756 3.13772 3.52391 3.82117 3.85726 4.10564 4.24460 4.48377 4.51147 4.66377 4.69100 4.97763 5.07087 5.10000 5.43579 5.78093 5.94059 5.99463 6.26643 6.66492 7.03845 7.37416 7.91598 8.35784 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.054388 B = 0.010653 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.696289 B = 2627.696868 C = 3127.240655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.543 5.543 3 C 0.386 3.614 4 C -0.458 4.458 5 H 0.111 0.889 6 C 0.028 3.972 7 N -0.763 5.763 8 Si 1.006 2.994 9 H -0.260 1.260 10 H -0.271 1.271 11 H -0.246 1.246 12 N -0.574 5.574 13 C 0.016 3.984 14 C 0.073 3.927 15 N -0.495 5.495 16 C 0.025 3.975 17 C -0.148 4.148 18 C 0.011 3.989 19 H 0.068 0.932 20 H 0.090 0.910 21 H 0.087 0.913 22 H 0.287 0.713 23 H 0.145 0.855 24 H 0.183 0.817 25 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -1.477 0.049 8.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.239 5.239 3 C 0.149 3.851 4 C -0.495 4.495 5 H 0.129 0.871 6 C -0.195 4.195 7 N -0.386 5.386 8 Si 0.825 3.175 9 H -0.185 1.185 10 H -0.196 1.196 11 H -0.169 1.169 12 N -0.299 5.299 13 C -0.113 4.113 14 C -0.093 4.093 15 N -0.205 5.205 16 C -0.129 4.129 17 C -0.172 4.172 18 C -0.105 4.105 19 H 0.087 0.913 20 H 0.109 0.891 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.162 0.838 24 H 0.200 0.800 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.530 -1.490 0.054 6.698 hybrid contribution -1.222 0.767 -0.019 1.443 sum -7.752 -0.723 0.035 7.786 Atomic orbital electron populations 1.21842 0.75481 1.04463 1.02984 1.45619 1.07345 1.04237 1.66673 1.21015 0.83633 0.88928 0.91546 1.19096 0.96233 0.86594 1.47621 0.87148 1.27069 0.94088 1.06395 0.91997 1.70099 1.03308 1.36505 1.28678 0.84851 0.79492 0.73539 0.79641 1.18484 1.19552 1.16927 1.71216 1.17837 1.07045 1.33845 1.21047 0.94110 0.93637 1.02520 1.21770 0.97122 0.86914 1.03451 1.67347 1.24884 1.14199 1.14113 1.22528 0.86400 1.00498 1.03480 1.20997 1.01667 0.88359 1.06167 1.19427 0.92419 0.90777 1.07907 0.91300 0.89146 0.89427 0.90248 0.83802 0.79990 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.04 10.94 127.77 1.40 4.44 15 2 N -0.54 -25.17 3.24 -536.13 -1.74 -26.91 15 3 C 0.39 21.07 7.41 133.65 0.99 22.06 15 4 C -0.46 -23.12 8.99 23.26 0.21 -22.91 15 5 H 0.11 4.84 7.10 -2.91 -0.02 4.82 15 6 C 0.03 1.36 5.50 85.39 0.47 1.83 15 7 N -0.76 -41.13 11.85 21.89 0.26 -40.87 15 8 Si 1.01 35.31 29.56 68.60 2.03 37.34 15 9 H -0.26 -8.79 7.11 99.48 0.71 -8.09 15 10 H -0.27 -9.30 7.11 99.48 0.71 -8.59 15 11 H -0.25 -7.97 7.11 99.48 0.71 -7.26 15 12 N -0.57 -34.14 9.33 -186.40 -1.74 -35.88 15 13 C 0.02 0.85 7.25 40.19 0.29 1.14 15 14 C 0.07 3.56 11.30 85.26 0.96 4.52 15 15 N -0.49 -21.69 10.32 -194.24 -2.00 -23.69 15 16 C 0.03 0.94 11.16 84.53 0.94 1.88 15 17 C -0.15 -5.67 10.12 22.36 0.23 -5.45 15 18 C 0.01 0.52 6.92 39.27 0.27 0.80 15 19 H 0.07 2.00 8.14 -2.38 -0.02 1.98 15 20 H 0.09 2.39 8.14 -2.38 -0.02 2.37 15 21 H 0.09 2.64 7.32 -2.39 -0.02 2.63 15 22 H 0.29 13.88 8.29 -92.71 -0.77 13.11 15 23 H 0.14 6.74 8.06 -2.91 -0.02 6.71 15 24 H 0.18 5.08 8.06 -2.91 -0.02 5.05 15 25 H 0.15 4.39 8.06 -2.91 -0.02 4.36 15 Total: -1.00 -68.36 228.42 3.77 -64.59 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.20 Total: 17.11 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.76 Total: 8.31 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -5.22 Total: -127.35 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -68.36 3.77 -64.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107288913.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.731 kcal (2) G-P(sol) polarization free energy of solvation -68.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds