Wall clock time and date at job start Mon Mar 30 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37761 * 126.51814 * 2 1 4 4 C 1.40355 * 125.28795 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00194 * 353.99224 * 4 3 2 6 6 C 1.40390 * 119.99740 * 174.25992 * 4 3 2 7 7 N 1.30560 * 119.99952 * 5.66972 * 6 4 3 8 8 Si 1.86803 * 119.99990 * 185.67233 * 6 4 3 9 9 H 1.48498 * 109.47125 * 94.98178 * 8 6 4 10 10 H 1.48498 * 109.47057 * 214.98122 * 8 6 4 11 11 H 1.48498 * 109.46844 * 334.98425 * 8 6 4 12 12 N 1.32531 * 109.41786 * 180.25313 * 3 2 1 13 13 C 1.33618 * 109.72979 * 359.61548 * 12 3 2 14 14 C 1.40642 * 134.41756 * 180.02562 * 13 12 3 15 15 C 1.36444 * 118.79990 * 180.32537 * 14 13 12 16 16 N 1.32315 * 121.59114 * 0.02562 * 15 14 13 17 17 C 1.31803 * 122.46755 * 359.97438 * 16 15 14 18 18 C 1.37744 * 126.51912 * 180.02562 * 2 1 3 19 19 H 1.08997 * 109.47414 * 89.97993 * 1 2 3 20 20 H 1.09008 * 109.47113 * 209.97803 * 1 2 3 21 21 H 1.09004 * 109.47147 * 329.97186 * 1 2 3 22 22 H 0.97001 * 119.99773 * 180.02562 * 7 6 4 23 23 H 1.08000 * 120.59908 * 0.35600 * 14 13 12 24 24 H 1.08005 * 119.20664 * 180.02562 * 15 14 13 25 25 H 1.08004 * 119.87590 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2848 1.1071 0.0000 4 6 1.8465 2.4405 -0.0005 5 1 0.7943 2.6631 -0.0988 6 6 2.7766 3.4851 0.1211 7 7 4.0557 3.2233 0.1233 8 14 2.1840 5.2495 0.2800 9 1 2.1123 5.6202 1.7161 10 1 3.1319 6.1547 -0.4182 11 1 0.8368 5.3761 -0.3318 12 7 3.5515 0.7174 -0.0055 13 6 3.6128 -0.6173 -0.0008 14 6 4.6615 -1.5545 -0.0026 15 6 4.3548 -2.8840 -0.0028 16 7 3.1008 -3.3062 -0.0019 17 6 2.0755 -2.4780 -0.0002 18 6 2.2847 -1.1070 -0.0005 19 1 -0.3634 0.0004 -1.0276 20 1 -0.3634 -0.8902 0.5135 21 1 -0.3634 0.8898 0.5143 22 1 4.6983 3.9450 0.2078 23 1 5.6908 -1.2277 -0.0033 24 1 5.1550 -3.6095 -0.0038 25 1 1.0685 -2.8685 0.0000 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107288915.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:51 Heat of formation + Delta-G solvation = 52.178838 kcal Electronic energy + Delta-G solvation = -12469.726741 eV Core-core repulsion = 10254.807941 eV Total energy + Delta-G solvation = -2214.918800 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.41265 -38.94049 -35.56747 -34.65864 -31.48023 -31.24814 -28.32637 -27.48942 -23.74487 -23.14880 -21.61837 -19.03056 -18.21263 -17.62601 -16.74191 -16.31836 -16.15156 -15.11485 -14.92488 -14.42771 -14.25817 -13.54387 -13.36544 -13.17023 -12.75783 -12.65361 -12.55616 -11.94202 -11.23995 -11.04680 -10.51136 -9.92354 -9.45260 -8.91421 -8.59581 -6.72393 0.29234 0.81710 1.41980 1.46013 1.59377 2.11995 2.29431 2.37114 3.14426 3.49830 3.76931 3.88230 4.17753 4.25579 4.41706 4.55124 4.71059 4.75913 4.88467 5.06877 5.26245 5.47290 5.70759 5.95240 6.02354 6.30102 6.64756 7.04900 7.35907 7.88343 8.33331 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.054614 B = 0.010641 C = 0.008955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.562277 B = 2630.681219 C = 3125.891003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.540 5.540 3 C 0.392 3.608 4 C -0.457 4.457 5 H 0.112 0.888 6 C 0.029 3.971 7 N -0.763 5.763 8 Si 1.007 2.993 9 H -0.262 1.262 10 H -0.270 1.270 11 H -0.244 1.244 12 N -0.581 5.581 13 C 0.087 3.913 14 C -0.196 4.196 15 C 0.075 3.925 16 N -0.528 5.528 17 C 0.117 3.883 18 C -0.072 4.072 19 H 0.068 0.932 20 H 0.091 0.909 21 H 0.087 0.913 22 H 0.287 0.713 23 H 0.123 0.877 24 H 0.178 0.822 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 -0.671 0.323 6.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.236 5.236 3 C 0.154 3.846 4 C -0.495 4.495 5 H 0.130 0.870 6 C -0.195 4.195 7 N -0.385 5.385 8 Si 0.826 3.174 9 H -0.187 1.187 10 H -0.195 1.195 11 H -0.167 1.167 12 N -0.307 5.307 13 C -0.048 4.048 14 C -0.220 4.220 15 C -0.076 4.076 16 N -0.241 5.241 17 C -0.046 4.046 18 C -0.184 4.184 19 H 0.087 0.913 20 H 0.109 0.891 21 H 0.105 0.895 22 H 0.098 0.902 23 H 0.141 0.859 24 H 0.195 0.805 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.337 -0.999 0.315 5.439 hybrid contribution -0.303 1.101 0.036 1.143 sum -5.641 0.102 0.352 5.653 Atomic orbital electron populations 1.21844 0.75476 1.04507 1.02951 1.45532 1.07246 1.04004 1.66792 1.21014 0.83703 0.89068 0.90782 1.19174 0.96760 0.86590 1.46951 0.86991 1.27113 0.94076 1.06369 0.91956 1.70091 1.03523 1.36472 1.28460 0.84823 0.79730 0.73432 0.79453 1.18694 1.19463 1.16696 1.71192 1.18073 1.07316 1.34123 1.20277 0.93303 0.92946 0.98248 1.20969 0.97832 0.92860 1.10293 1.22131 0.94030 0.93112 0.98361 1.67617 0.99740 1.37755 1.19006 1.21715 0.98971 0.84900 0.99046 1.20286 0.93039 0.91549 1.13478 0.91346 0.89072 0.89451 0.90206 0.85867 0.80497 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.06 10.93 127.77 1.40 4.45 15 2 N -0.54 -25.17 3.25 -536.13 -1.74 -26.91 15 3 C 0.39 21.39 7.41 133.74 0.99 22.38 15 4 C -0.46 -23.01 8.96 23.31 0.21 -22.80 15 5 H 0.11 4.90 7.19 -2.91 -0.02 4.88 15 6 C 0.03 1.38 5.50 85.41 0.47 1.85 15 7 N -0.76 -40.97 11.88 21.90 0.26 -40.71 15 8 Si 1.01 35.11 29.57 68.60 2.03 37.14 15 9 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 10 H -0.27 -9.18 7.11 99.48 0.71 -8.47 15 11 H -0.24 -7.79 7.11 99.48 0.71 -7.09 15 12 N -0.58 -34.61 9.35 -186.39 -1.74 -36.36 15 13 C 0.09 4.70 7.28 40.28 0.29 4.99 15 14 C -0.20 -9.09 10.14 22.44 0.23 -8.86 15 15 C 0.08 3.01 11.08 84.20 0.93 3.95 15 16 N -0.53 -21.76 10.33 -196.56 -2.03 -23.79 15 17 C 0.12 4.81 11.24 84.80 0.95 5.76 15 18 C -0.07 -3.47 6.92 39.14 0.27 -3.20 15 19 H 0.07 2.00 8.14 -2.39 -0.02 1.98 15 20 H 0.09 2.43 8.14 -2.38 -0.02 2.41 15 21 H 0.09 2.64 7.39 -2.39 -0.02 2.63 15 22 H 0.29 13.83 8.29 -92.71 -0.77 13.06 15 23 H 0.12 5.39 8.06 -2.91 -0.02 5.36 15 24 H 0.18 5.48 8.06 -2.91 -0.02 5.46 15 25 H 0.17 5.46 8.06 -2.91 -0.02 5.44 15 Total: -1.00 -68.33 228.48 3.72 -64.61 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.20 Total: 17.49 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.74 Total: 8.53 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -5.25 Total: -127.77 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Total: -68.33 3.72 -64.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107288915.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.789 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds