Wall clock time and date at job start Mon Mar 30 2020 01:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38145 * 120.09518 * 2 1 4 4 C 1.38907 * 120.60520 * 179.72752 * 3 2 1 5 5 C 1.36498 * 120.64173 * 0.57691 * 4 3 2 6 6 C 1.40347 * 119.78742 * 359.70085 * 5 4 3 7 7 N 1.34156 * 133.56393 * 180.02562 * 6 5 4 8 8 C 1.32373 * 108.90304 * 179.97438 * 7 6 5 9 9 C 1.39976 * 125.12593 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00218 * 180.02562 * 9 8 7 11 11 C 1.40437 * 120.00103 * 0.02562 * 9 8 7 12 12 N 1.30542 * 119.99958 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47340 * 90.00154 * 13 11 9 15 15 H 1.48496 * 109.47290 * 210.00375 * 13 11 9 16 16 H 1.48506 * 109.47360 * 330.00093 * 13 11 9 17 17 O 1.35092 * 109.74762 * 0.02562 * 8 7 6 18 18 C 1.35124 * 107.86991 * 359.97438 * 17 8 7 19 19 H 1.09002 * 109.47152 * 269.72125 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.72226 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.72206 * 1 2 3 22 22 H 1.08007 * 119.69754 * 0.02562 * 3 2 1 23 23 H 1.08005 * 119.68151 * 180.27682 * 4 3 2 24 24 H 1.07998 * 120.10673 * 179.68756 * 5 4 3 25 25 H 0.96996 * 119.99992 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1952 0.0000 4 6 3.5887 1.2076 0.0057 5 6 4.2949 0.0395 -0.0004 6 6 3.6132 -1.1873 -0.0063 7 7 4.0139 -2.4676 -0.0124 8 6 2.9468 -3.2509 -0.0155 9 6 2.9750 -4.6504 -0.0225 10 1 2.0507 -5.2091 -0.0250 11 6 4.2051 -5.3279 -0.0263 12 7 5.3222 -4.6526 -0.0227 13 14 4.2427 -7.1955 -0.0363 14 1 4.2525 -7.6829 -1.4390 15 1 5.4648 -7.6698 0.6611 16 1 3.0404 -7.7186 0.6610 17 8 1.8264 -2.4960 -0.0120 18 6 2.2012 -1.1978 -0.0060 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8925 -0.5095 22 1 1.6563 2.1286 0.0004 23 1 4.1152 2.1507 0.0101 24 1 5.3747 0.0592 -0.0010 25 1 6.1718 -5.1206 -0.0249 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107291874.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:14 Heat of formation + Delta-G solvation = -6.601627 kcal Electronic energy + Delta-G solvation = -12373.213667 eV Core-core repulsion = 10123.453204 eV Total energy + Delta-G solvation = -2249.760463 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.20577 -38.65254 -36.10735 -34.85519 -32.71169 -31.03550 -28.14352 -27.54305 -23.70691 -23.14055 -21.33297 -19.52103 -18.51539 -17.63627 -16.99786 -16.56731 -15.96666 -14.93596 -14.38331 -14.30158 -14.25415 -13.57352 -13.18535 -13.05680 -12.93954 -12.80586 -12.45790 -12.01794 -11.90071 -11.80938 -11.07144 -10.30203 -9.47417 -9.04476 -8.76074 -6.90359 0.25635 0.67698 1.37015 1.41490 1.57536 2.07346 2.08439 2.51185 2.91700 3.28301 3.84484 4.05908 4.24303 4.50156 4.55516 4.69242 4.78597 4.87664 4.93166 5.08238 5.22622 5.46965 5.61073 5.73203 5.83196 5.95637 6.26006 6.31538 6.54132 7.75145 8.18429 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.060543 B = 0.009686 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.370973 B = 2890.123166 C = 3337.348796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.055 4.055 3 C -0.165 4.165 4 C -0.090 4.090 5 C -0.158 4.158 6 C 0.050 3.950 7 N -0.589 5.589 8 C 0.319 3.681 9 C -0.440 4.440 10 H 0.113 0.887 11 C 0.024 3.976 12 N -0.753 5.753 13 Si 1.023 2.977 14 H -0.254 1.254 15 H -0.260 1.260 16 H -0.246 1.246 17 O -0.270 6.270 18 C -0.104 4.104 19 H 0.077 0.923 20 H 0.046 0.954 21 H 0.100 0.900 22 H 0.167 0.833 23 H 0.161 0.839 24 H 0.115 0.885 25 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 3.931 0.037 5.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.056 4.056 3 C -0.184 4.184 4 C -0.109 4.109 5 C -0.179 4.179 6 C -0.071 4.071 7 N -0.324 5.324 8 C 0.138 3.862 9 C -0.474 4.474 10 H 0.131 0.869 11 C -0.199 4.199 12 N -0.376 5.376 13 Si 0.839 3.161 14 H -0.178 1.178 15 H -0.184 1.184 16 H -0.169 1.169 17 O -0.170 6.170 18 C -0.155 4.155 19 H 0.095 0.905 20 H 0.065 0.935 21 H 0.118 0.882 22 H 0.184 0.816 23 H 0.179 0.821 24 H 0.133 0.867 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.349 3.678 0.038 4.975 hybrid contribution -0.285 -0.597 -0.005 0.661 sum -3.634 3.082 0.033 4.765 Atomic orbital electron populations 1.20719 0.89103 1.03133 1.02854 1.19146 0.97158 0.87996 1.01282 1.20985 0.93965 0.96284 1.07168 1.20918 0.94426 0.97253 0.98320 1.20115 0.99414 0.89499 1.08904 1.21018 0.92118 0.94656 0.99271 1.71425 1.27282 0.98448 1.35247 1.23119 0.76784 0.94549 0.91771 1.19106 0.96922 0.85262 1.46100 0.86913 1.27303 0.92901 1.07926 0.91819 1.70064 0.99782 1.41110 1.26654 0.84627 0.79962 0.71362 0.80165 1.17835 1.18447 1.16926 1.84526 1.37096 1.15756 1.79632 1.20811 0.95682 0.84502 1.14457 0.90487 0.93504 0.88170 0.81571 0.82147 0.86708 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.20 10.02 71.24 0.71 -2.48 15 2 C -0.05 -2.25 5.88 -19.84 -0.12 -2.37 15 3 C -0.16 -5.58 9.69 22.41 0.22 -5.36 15 4 C -0.09 -3.21 9.96 22.02 0.22 -2.99 15 5 C -0.16 -7.29 10.07 22.38 0.23 -7.07 15 6 C 0.05 2.81 7.22 40.03 0.29 3.10 15 7 N -0.59 -37.14 9.37 -302.08 -2.83 -39.97 15 8 C 0.32 19.56 7.68 85.03 0.65 20.21 15 9 C -0.44 -24.54 9.46 23.23 0.22 -24.32 15 10 H 0.11 5.67 7.85 -2.91 -0.02 5.65 15 11 C 0.02 1.21 5.50 85.42 0.47 1.68 15 12 N -0.75 -41.44 11.84 21.91 0.26 -41.18 15 13 Si 1.02 36.31 29.56 68.60 2.03 38.34 15 14 H -0.25 -8.56 7.11 99.48 0.71 -7.85 15 15 H -0.26 -8.68 7.11 99.48 0.71 -7.98 15 16 H -0.25 -8.22 7.11 99.48 0.71 -7.51 15 17 O -0.27 -15.68 10.83 -18.69 -0.20 -15.88 15 18 C -0.10 -5.51 7.09 23.05 0.16 -5.35 15 19 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 20 H 0.05 1.60 8.09 -2.39 -0.02 1.58 15 21 H 0.10 2.35 8.09 -2.38 -0.02 2.33 15 22 H 0.17 3.94 8.06 -2.91 -0.02 3.92 15 23 H 0.16 4.12 8.06 -2.91 -0.02 4.09 15 24 H 0.11 5.05 8.06 -2.91 -0.02 5.03 15 25 H 0.29 14.23 8.29 -92.71 -0.77 13.46 15 Total: -1.00 -72.24 230.15 3.51 -68.73 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.20 Total: 14.90 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 3.05 Total: -24.94 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -2.57 Total: -81.15 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.20 Total: -15.88 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -72.24 3.51 -68.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107291874.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.128 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds