Wall clock time and date at job start Mon Mar 30 2020 02:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36081 * 120.36141 * 2 1 4 4 C 1.40412 * 119.67884 * 180.02562 * 3 2 1 5 5 C 1.35151 * 120.26858 * 0.02562 * 4 3 2 6 6 N 1.36038 * 120.60395 * 0.02764 * 5 4 3 7 7 N 1.40228 * 132.93773 * 179.97438 * 6 5 4 8 8 C 1.33107 * 106.88770 * 180.02562 * 7 6 5 9 9 C 1.41542 * 125.44975 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99811 * 186.28143 * 9 8 7 11 11 C 1.39909 * 120.00072 * 6.27629 * 9 8 7 12 12 N 1.30814 * 120.00260 * 6.17045 * 11 9 8 13 13 Si 1.86802 * 119.99833 * 186.44730 * 11 9 8 14 14 H 1.48499 * 109.47164 * 264.73680 * 13 11 9 15 15 H 1.48499 * 109.47135 * 24.74300 * 13 11 9 16 16 H 1.48504 * 109.46837 * 144.73708 * 13 11 9 17 17 N 1.34041 * 109.09547 * 0.23761 * 8 7 6 18 18 C 1.32430 * 109.68006 * 359.59512 * 17 8 7 19 19 H 1.08993 * 109.47423 * 89.99078 * 1 2 3 20 20 H 1.09001 * 109.47382 * 209.99959 * 1 2 3 21 21 H 1.09003 * 109.46404 * 329.99243 * 1 2 3 22 22 H 1.08001 * 120.16337 * 0.02562 * 3 2 1 23 23 H 1.07997 * 119.86529 * 180.02562 * 4 3 2 24 24 H 1.08006 * 119.69874 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00310 * 180.26974 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1742 0.0000 4 6 3.5989 1.1575 -0.0005 5 6 4.2661 -0.0178 -0.0016 6 7 3.5899 -1.1982 -0.0027 7 7 4.0057 -2.5374 -0.0044 8 6 2.9040 -3.2844 -0.0054 9 6 2.8717 -4.6995 -0.0077 10 1 1.9298 -5.2179 -0.1107 11 6 4.0598 -5.4266 0.1234 12 7 5.1839 -4.8042 0.3687 13 14 4.0421 -7.2855 -0.0597 14 1 3.9320 -7.9140 1.2813 15 1 2.8812 -7.6899 -0.8928 16 1 5.2992 -7.7305 -0.7132 17 7 1.8302 -2.4821 -0.0097 18 6 2.2193 -1.2163 -0.0027 19 1 -0.3634 0.0002 -1.0276 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3632 0.8900 0.5140 22 1 1.6634 2.1144 0.0004 23 1 4.1478 2.0875 -0.0001 24 1 5.3462 -0.0200 -0.0024 25 1 6.0083 -5.3079 0.4557 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107832179.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:40 Heat of formation + Delta-G solvation = 77.512827 kcal Electronic energy + Delta-G solvation = -12361.608463 eV Core-core repulsion = 10147.788227 eV Total energy + Delta-G solvation = -2213.820236 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.70733 -38.43795 -35.44426 -34.92338 -31.72831 -30.76570 -28.57742 -27.55316 -23.89532 -23.21691 -21.84278 -19.13329 -18.20792 -17.42351 -16.77876 -16.52853 -16.03609 -14.98972 -14.74225 -14.06857 -13.47671 -13.37365 -13.21317 -13.07884 -12.80941 -12.55314 -12.48791 -11.97759 -11.65792 -11.31295 -11.18672 -10.32495 -9.92630 -8.74251 -8.63324 -6.76183 0.10514 0.56783 1.36659 1.38153 1.55635 2.00726 2.19630 2.22526 2.72642 3.39548 3.54999 3.75273 4.13317 4.20254 4.46918 4.78418 4.85854 4.89393 5.00548 5.19586 5.29712 5.36194 5.42358 5.81837 6.02888 6.20725 6.44044 6.69418 6.78998 7.87442 8.38434 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.061345 B = 0.009598 C = 0.008353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.324596 B = 2916.516543 C = 3351.333276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.124 4.124 3 C -0.053 4.053 4 C -0.174 4.174 5 C 0.084 3.916 6 N -0.325 5.325 7 N -0.408 5.408 8 C 0.329 3.671 9 C -0.465 4.465 10 H 0.090 0.910 11 C 0.026 3.974 12 N -0.805 5.805 13 Si 1.010 2.990 14 H -0.257 1.257 15 H -0.255 1.255 16 H -0.263 1.263 17 N -0.629 5.629 18 C 0.247 3.753 19 H 0.073 0.927 20 H 0.043 0.957 21 H 0.105 0.895 22 H 0.190 0.810 23 H 0.198 0.802 24 H 0.165 0.835 25 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 10.385 -0.552 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C -0.079 4.079 4 C -0.198 4.198 5 C -0.047 4.047 6 N -0.099 5.099 7 N -0.246 5.246 8 C 0.073 3.927 9 C -0.505 4.505 10 H 0.108 0.892 11 C -0.192 4.192 12 N -0.431 5.431 13 Si 0.828 3.172 14 H -0.182 1.182 15 H -0.178 1.178 16 H -0.187 1.187 17 N -0.364 5.364 18 C -0.008 4.008 19 H 0.092 0.908 20 H 0.062 0.938 21 H 0.124 0.876 22 H 0.207 0.793 23 H 0.215 0.785 24 H 0.183 0.817 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.022 9.743 -0.521 9.964 hybrid contribution 0.344 -0.863 -0.001 0.929 sum -1.678 8.880 -0.522 9.052 Atomic orbital electron populations 1.20525 0.87884 1.03185 1.02739 1.19476 0.98169 0.87900 1.07355 1.21487 0.93929 0.97826 0.94641 1.21234 0.94958 0.96803 1.06787 1.22046 0.99953 0.82379 1.00302 1.48638 1.07277 1.07857 1.46099 1.79740 1.18412 0.81467 1.44970 1.21534 0.84283 0.95964 0.90892 1.18918 0.95964 0.86630 1.49021 0.89187 1.27035 0.93450 1.07299 0.91452 1.70001 1.00207 1.40227 1.32710 0.84801 0.79263 0.73363 0.79751 1.18157 1.17833 1.18707 1.70943 1.31144 0.98936 1.35344 1.22530 0.83865 0.95291 0.99142 0.90819 0.93785 0.87615 0.79283 0.78518 0.81742 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.52 10.03 71.24 0.71 -1.81 15 2 C -0.12 -4.53 5.90 -19.70 -0.12 -4.64 15 3 C -0.05 -1.38 9.72 22.30 0.22 -1.17 15 4 C -0.17 -4.55 9.99 22.09 0.22 -4.33 15 5 C 0.08 3.17 11.20 83.33 0.93 4.10 15 6 N -0.32 -16.95 3.90 -192.62 -0.75 -17.70 15 7 N -0.41 -25.72 11.04 -56.45 -0.62 -26.34 15 8 C 0.33 21.23 7.57 135.07 1.02 22.25 15 9 C -0.47 -28.80 9.50 23.49 0.22 -28.58 15 10 H 0.09 5.34 7.85 -2.91 -0.02 5.32 15 11 C 0.03 1.44 5.49 85.25 0.47 1.91 15 12 N -0.80 -47.32 11.95 21.82 0.26 -47.06 15 13 Si 1.01 41.39 29.56 68.60 2.03 43.42 15 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 15 H -0.25 -10.10 7.11 99.48 0.71 -9.40 15 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 17 N -0.63 -37.78 11.29 -191.86 -2.17 -39.94 15 18 C 0.25 12.61 7.58 134.15 1.02 13.63 15 19 H 0.07 1.99 8.14 -2.39 -0.02 1.98 15 20 H 0.04 1.53 8.10 -2.39 -0.02 1.51 15 21 H 0.11 2.10 8.09 -2.39 -0.02 2.08 15 22 H 0.19 2.74 8.06 -2.91 -0.02 2.71 15 23 H 0.20 2.91 8.06 -2.91 -0.02 2.89 15 24 H 0.17 5.48 8.06 -2.91 -0.02 5.46 15 25 H 0.29 15.00 8.30 -92.71 -0.77 14.23 15 Total: -1.00 -82.71 230.71 4.65 -78.06 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.20 Total: 8.20 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 4.70 Total: 1.36 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -3.28 Total: -131.04 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -82.71 4.65 -78.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107832179.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.577 kcal (2) G-P(sol) polarization free energy of solvation -82.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds