Wall clock time and date at job start Mon Mar 30 2020 02:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40413 * 120.16074 * 2 1 4 4 C 1.35152 * 120.26939 * 180.02562 * 3 2 1 5 5 N 1.36037 * 120.60422 * 0.02562 * 4 3 2 6 6 N 1.40229 * 132.93616 * 180.02562 * 5 4 3 7 7 C 1.33114 * 106.88643 * 179.97438 * 6 5 4 8 8 C 1.41536 * 125.44742 * 179.97438 * 7 6 5 9 9 H 1.08010 * 119.99710 * 180.02562 * 8 7 6 10 10 C 1.39912 * 120.00627 * 0.02562 * 8 7 6 11 11 N 1.30814 * 119.99467 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00202 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47198 * 90.00192 * 12 10 8 14 14 H 1.48497 * 109.47155 * 210.00205 * 12 10 8 15 15 H 1.48501 * 109.47106 * 330.00255 * 12 10 8 16 16 N 1.34048 * 109.09588 * 359.97438 * 7 6 5 17 17 C 1.32434 * 109.67746 * 359.97438 * 16 7 6 18 18 C 1.36091 * 120.16332 * 180.02562 * 2 1 3 19 19 H 1.08996 * 109.46941 * 269.98043 * 1 2 3 20 20 H 1.08996 * 109.46977 * 29.97972 * 1 2 3 21 21 H 1.08997 * 109.46872 * 149.98173 * 1 2 3 22 22 H 1.07999 * 119.86398 * 0.04231 * 3 2 1 23 23 H 1.07999 * 119.69699 * 179.97438 * 4 3 2 24 24 H 0.97001 * 119.99564 * 180.02562 * 11 10 8 25 25 H 1.08005 * 120.35448 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2124 1.2140 0.0000 4 6 3.5640 1.2166 -0.0005 5 7 4.2587 0.0470 -0.0016 6 7 5.6292 -0.2499 -0.0018 7 6 5.7375 -1.5766 -0.0025 8 6 6.9534 -2.3010 -0.0034 9 1 6.9386 -3.3810 -0.0043 10 6 8.1746 -1.6182 -0.0033 11 7 8.1925 -0.3102 -0.0017 12 14 9.7793 -2.5744 -0.0053 13 1 10.2038 -2.8260 -1.4059 14 1 10.8255 -1.7870 0.6952 15 1 9.5842 -3.8702 0.6933 16 7 4.5106 -2.1167 -0.0020 17 6 3.6000 -1.1550 -0.0006 18 6 2.1908 -1.1766 -0.0005 19 1 -0.3633 -0.0004 1.0276 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8898 -0.5141 22 1 1.6728 2.1496 0.0007 23 1 4.0972 2.1558 -0.0009 24 1 9.0392 0.1632 -0.0020 25 1 1.6592 -2.1168 -0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107832183.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:54 Heat of formation + Delta-G solvation = 77.337572 kcal Electronic energy + Delta-G solvation = -12246.659942 eV Core-core repulsion = 10032.832106 eV Total energy + Delta-G solvation = -2213.827835 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.69984 -38.63989 -35.54459 -34.51342 -31.92162 -30.73469 -28.79300 -27.47836 -23.99609 -22.97960 -21.91606 -19.16095 -18.34117 -17.13478 -16.82439 -16.50424 -15.79256 -15.52034 -14.76238 -14.17074 -13.43705 -13.36223 -13.12132 -13.06420 -12.68873 -12.61563 -12.46020 -11.96876 -11.66956 -11.48293 -11.10164 -10.34355 -9.85650 -8.83031 -8.62855 -6.78062 0.08969 0.52219 1.37455 1.38589 1.55438 2.00120 2.19518 2.21942 2.70261 3.39901 3.49648 3.74817 4.03432 4.24894 4.50841 4.63740 4.86958 4.96985 5.06457 5.17450 5.21339 5.32196 5.51595 5.77393 6.01400 6.19927 6.42763 6.67837 6.78770 7.86801 8.38564 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.089559 B = 0.008373 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.569075 B = 3343.457614 C = 3640.883132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.018 4.018 3 C -0.181 4.181 4 C 0.100 3.900 5 N -0.328 5.328 6 N -0.405 5.405 7 C 0.326 3.674 8 C -0.463 4.463 9 H 0.090 0.910 10 C 0.024 3.976 11 N -0.802 5.802 12 Si 1.011 2.989 13 H -0.258 1.258 14 H -0.262 1.262 15 H -0.255 1.255 16 N -0.638 5.638 17 C 0.250 3.750 18 C -0.161 4.161 19 H 0.092 0.908 20 H 0.097 0.903 21 H 0.077 0.923 22 H 0.197 0.803 23 H 0.170 0.830 24 H 0.286 0.714 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 4.322 0.026 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.026 4.026 3 C -0.205 4.205 4 C -0.031 4.031 5 N -0.102 5.102 6 N -0.243 5.243 7 C 0.072 3.928 8 C -0.503 4.503 9 H 0.108 0.892 10 C -0.194 4.194 11 N -0.429 5.429 12 Si 0.830 3.170 13 H -0.183 1.183 14 H -0.186 1.186 15 H -0.178 1.178 16 N -0.372 5.372 17 C -0.005 4.005 18 C -0.183 4.183 19 H 0.110 0.890 20 H 0.115 0.885 21 H 0.096 0.904 22 H 0.214 0.786 23 H 0.187 0.813 24 H 0.097 0.903 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.940 4.511 0.028 10.916 hybrid contribution 0.846 -0.307 -0.001 0.899 sum -9.095 4.205 0.027 10.020 Atomic orbital electron populations 1.20870 0.86125 1.04793 1.04167 1.20313 0.98941 0.90848 0.92507 1.21114 0.90377 1.00743 1.08224 1.22047 0.93538 0.88671 0.98837 1.48684 1.07982 1.07189 1.46381 1.79795 0.84283 1.15056 1.45119 1.21570 0.92116 0.88174 0.90983 1.18948 0.87568 0.94383 1.49388 0.89161 1.27050 1.04761 0.96083 0.91512 1.70009 1.29745 1.09551 1.33553 0.84790 0.74053 0.78478 0.79723 1.18251 1.18605 1.17830 1.70970 0.99350 1.31050 1.35856 1.22598 0.96246 0.83140 0.98475 1.20271 0.86364 1.01307 1.10385 0.88950 0.88463 0.90372 0.78650 0.81313 0.90326 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 10.02 71.23 0.71 -0.89 15 2 C -0.02 -0.49 5.88 -19.84 -0.12 -0.61 15 3 C -0.18 -4.88 9.68 22.09 0.21 -4.67 15 4 C 0.10 3.79 11.20 83.33 0.93 4.72 15 5 N -0.33 -17.16 3.90 -192.62 -0.75 -17.91 15 6 N -0.40 -25.52 10.96 -56.44 -0.62 -26.14 15 7 C 0.33 21.22 7.60 135.06 1.03 22.24 15 8 C -0.46 -28.70 9.51 23.49 0.22 -28.48 15 9 H 0.09 5.37 7.85 -2.91 -0.02 5.34 15 10 C 0.02 1.35 5.49 85.25 0.47 1.82 15 11 N -0.80 -46.98 11.89 21.82 0.26 -46.72 15 12 Si 1.01 41.31 29.56 68.60 2.03 43.34 15 13 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 14 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 15 H -0.25 -10.04 7.11 99.48 0.71 -9.34 15 16 N -0.64 -38.88 11.30 -191.85 -2.17 -41.04 15 17 C 0.25 12.97 7.87 134.15 1.06 14.03 15 18 C -0.16 -6.05 9.75 22.43 0.22 -5.83 15 19 H 0.09 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.10 1.03 8.09 -2.39 -0.02 1.01 15 21 H 0.08 1.13 8.08 -2.39 -0.02 1.11 15 22 H 0.20 3.08 8.06 -2.91 -0.02 3.06 15 23 H 0.17 5.56 8.06 -2.91 -0.02 5.54 15 24 H 0.29 14.95 8.30 -92.71 -0.77 14.18 15 25 H 0.15 5.03 8.06 -2.91 -0.02 5.00 15 Total: -1.00 -82.29 230.57 4.69 -77.61 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.20 Total: 8.54 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 4.74 Total: 2.32 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -3.28 Total: -131.82 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -82.29 4.69 -77.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107832183.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.947 kcal (2) G-P(sol) polarization free energy of solvation -82.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds