Wall clock time and date at job start Mon Mar 30 2020 02:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39563 * 119.12643 * 2 1 4 4 C 1.35927 * 121.73517 * 179.97438 * 3 2 1 5 5 C 1.40537 * 119.49380 * 359.97438 * 4 3 2 6 6 N 1.32338 * 136.51707 * 180.37031 * 5 4 3 7 7 N 1.28744 * 108.86491 * 180.02562 * 6 5 4 8 8 C 1.37187 * 123.57959 * 179.82769 * 7 6 5 9 9 H 1.08004 * 119.99711 * 188.16303 * 8 7 6 10 10 C 1.39311 * 119.99842 * 8.16747 * 8 7 6 11 11 N 1.31028 * 119.99695 * 193.89666 * 10 8 7 12 12 Si 1.86794 * 120.00102 * 13.89158 * 10 8 7 13 13 H 1.48498 * 109.47308 * 270.00220 * 12 10 8 14 14 H 1.48497 * 109.47177 * 30.00612 * 12 10 8 15 15 H 1.48511 * 109.46795 * 150.00073 * 12 10 8 16 16 N 1.28753 * 112.83826 * 359.56714 * 7 6 5 17 17 C 1.32326 * 108.86608 * 0.26170 * 16 7 6 18 18 C 1.35923 * 119.13084 * 179.97438 * 2 1 3 19 19 H 1.08995 * 109.47423 * 90.00494 * 1 2 3 20 20 H 1.09001 * 109.46971 * 210.00030 * 1 2 3 21 21 H 1.09001 * 109.47227 * 329.99528 * 1 2 3 22 22 H 1.07995 * 119.13461 * 359.95400 * 3 2 1 23 23 H 1.08003 * 120.25072 * 179.97438 * 4 3 2 24 24 H 0.97000 * 119.99775 * 354.74155 * 11 10 8 25 25 H 1.08005 * 120.25286 * 0.04489 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2192 0.0000 4 6 3.5442 1.2810 0.0005 5 6 4.2911 0.0905 0.0016 6 7 5.5728 -0.2389 0.0082 7 7 5.6727 -1.5225 0.0047 8 6 6.8711 -2.1903 0.0063 9 1 6.8924 -3.2615 -0.1296 10 6 8.0603 -1.4866 0.1834 11 7 9.2074 -2.0615 -0.0823 12 14 8.0196 0.2764 0.7994 13 1 7.9334 1.2032 -0.3576 14 1 6.8361 0.4673 1.6759 15 1 9.2571 0.5601 1.5699 16 7 4.5285 -2.1128 0.0049 17 6 3.5741 -1.1961 0.0031 18 6 2.1687 -1.1873 0.0005 19 1 -0.3634 -0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8899 0.5139 22 1 1.6182 2.1376 -0.0008 23 1 4.0453 2.2378 0.0001 24 1 9.2343 -2.9993 -0.3287 25 1 1.6187 -2.1168 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107839153.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:30 Heat of formation + Delta-G solvation = 86.908841 kcal Electronic energy + Delta-G solvation = -12415.632958 eV Core-core repulsion = 10202.220164 eV Total energy + Delta-G solvation = -2213.412794 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.02847 -39.04875 -36.09392 -33.97589 -33.30377 -31.57409 -29.43704 -26.52965 -24.48654 -22.83025 -21.73180 -20.75914 -18.56197 -18.09847 -17.43835 -16.10909 -15.76194 -15.49794 -15.13263 -14.70441 -14.33771 -13.44020 -13.14410 -12.88558 -12.68137 -12.48643 -12.44547 -12.29427 -11.69251 -11.37219 -11.28213 -10.66209 -9.94539 -9.73888 -8.90146 -7.05303 -0.12689 0.81144 1.26722 1.40607 1.70971 1.81225 2.07976 2.26190 2.65944 2.92208 3.13561 3.90904 4.13822 4.36201 4.58992 4.68727 4.77802 4.97822 5.00409 5.01789 5.26668 5.37398 5.44264 5.66608 5.74236 5.82546 5.85681 6.21138 6.60875 7.65181 7.76220 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.064839 B = 0.010643 C = 0.009274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.732665 B = 2630.276019 C = 3018.535976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.086 4.086 5 C -0.038 4.038 6 N -0.405 5.405 7 N 0.094 4.906 8 C -0.368 4.368 9 H 0.123 0.877 10 C 0.032 3.968 11 N -0.791 5.791 12 Si 1.145 2.855 13 H -0.273 1.273 14 H -0.288 1.288 15 H -0.283 1.283 16 N -0.407 5.407 17 C -0.026 4.026 18 C -0.096 4.096 19 H 0.080 0.920 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.166 0.834 23 H 0.139 0.861 24 H 0.294 0.706 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 6.372 0.782 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.134 4.134 4 C -0.109 4.109 5 C -0.175 4.175 6 N -0.259 5.259 7 N 0.209 4.791 8 C -0.511 4.511 9 H 0.141 0.859 10 C -0.189 4.189 11 N -0.417 5.417 12 Si 0.971 3.029 13 H -0.199 1.199 14 H -0.216 1.216 15 H -0.212 1.212 16 N -0.259 5.259 17 C -0.165 4.165 18 C -0.118 4.118 19 H 0.099 0.901 20 H 0.088 0.912 21 H 0.106 0.894 22 H 0.184 0.816 23 H 0.156 0.844 24 H 0.106 0.894 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.457 7.011 1.058 11.820 hybrid contribution -1.026 -1.791 -0.516 2.127 sum -10.483 5.221 0.542 11.723 Atomic orbital electron populations 1.20783 0.87693 1.03871 1.03252 1.19735 0.98037 0.91417 0.99914 1.20817 0.92365 0.98797 1.01391 1.20047 0.93956 0.93835 1.03024 1.21924 0.88701 0.97697 1.09205 1.73214 1.20447 0.97145 1.35060 1.44238 1.05708 1.00711 1.28481 1.21666 0.80157 0.95867 1.53428 0.85935 1.27888 0.88968 1.10584 0.91416 1.70756 1.25965 1.15345 1.29665 0.82268 0.73771 0.69010 0.77839 1.19912 1.21598 1.21178 1.74348 0.91531 1.25633 1.34375 1.21970 0.96611 0.89807 1.08076 1.19774 0.87285 0.99625 1.05165 0.90105 0.91191 0.89425 0.81615 0.84362 0.89378 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 9.96 71.24 0.71 -1.20 15 2 C -0.09 -2.63 5.84 -20.08 -0.12 -2.75 15 3 C -0.11 -3.34 9.52 22.05 0.21 -3.13 15 4 C -0.09 -3.29 10.08 22.29 0.22 -3.07 15 5 C -0.04 -1.89 7.61 42.01 0.32 -1.57 15 6 N -0.40 -22.29 6.69 -48.84 -0.33 -22.61 15 7 N 0.09 5.36 3.94 -53.80 -0.21 5.15 15 8 C -0.37 -20.61 10.71 84.11 0.90 -19.71 15 9 H 0.12 6.82 8.06 -2.91 -0.02 6.80 15 10 C 0.03 1.68 5.50 85.07 0.47 2.14 15 11 N -0.79 -40.77 13.67 21.71 0.30 -40.47 15 12 Si 1.15 53.97 26.27 68.60 1.80 55.78 15 13 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 14 H -0.29 -14.37 6.43 99.48 0.64 -13.73 15 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 16 N -0.41 -22.76 11.96 -48.84 -0.58 -23.35 15 17 C -0.03 -1.29 7.61 42.01 0.32 -0.97 15 18 C -0.10 -3.70 9.65 22.29 0.22 -3.49 15 19 H 0.08 1.35 8.14 -2.39 -0.02 1.33 15 20 H 0.07 1.25 8.06 -2.39 -0.02 1.23 15 21 H 0.09 1.28 8.07 -2.39 -0.02 1.26 15 22 H 0.17 3.31 8.06 -2.91 -0.02 3.29 15 23 H 0.14 4.55 8.06 -2.91 -0.02 4.53 15 24 H 0.29 14.42 8.73 -92.71 -0.81 13.61 15 25 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 Total: -1.00 -65.28 224.88 5.32 -59.96 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: 1.09 Total: -0.72 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 3.25 Total: -33.73 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -0.83 Total: -81.28 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 1.80 Total: 55.78 kcal Total: -65.28 5.32 -59.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107839153.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.870 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds