Wall clock time and date at job start Mon Mar 30 2020 01:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35787 * 117.00271 * 2 1 4 4 C 1.39285 * 119.46635 * 0.02680 * 3 2 1 5 5 C 1.37814 * 121.23195 * 179.69132 * 4 3 2 6 6 C 1.39569 * 120.10994 * 0.56387 * 5 4 3 7 7 C 1.43198 * 120.52150 * 179.71677 * 6 5 4 8 8 N 6.72614 * 115.88865 * 0.02562 * 2 1 3 9 9 C 1.46547 * 118.96150 * 359.44895 * 6 5 4 10 10 C 1.40836 * 120.58480 * 180.29503 * 9 6 5 11 11 H 1.07995 * 119.99714 * 336.08061 * 10 9 6 12 12 C 1.40218 * 120.00007 * 156.07402 * 10 9 6 13 13 N 1.30667 * 120.00565 * 341.65522 * 12 10 9 14 14 Si 1.86808 * 119.99756 * 161.65058 * 12 10 9 15 15 H 1.48498 * 109.46949 * 90.00164 * 14 12 10 16 16 H 1.48500 * 109.46880 * 210.00426 * 14 12 10 17 17 H 1.48493 * 109.46828 * 330.00147 * 14 12 10 18 18 C 1.38032 * 119.46448 * 180.02562 * 3 2 1 19 19 H 1.09001 * 109.46548 * 299.99850 * 1 2 3 20 20 H 1.08996 * 109.46705 * 59.99352 * 1 2 3 21 21 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 22 22 H 1.08003 * 119.38208 * 359.97438 * 4 3 2 23 23 H 1.08001 * 119.94789 * 180.28602 * 5 4 3 24 24 H 0.96990 * 120.00286 * 185.04446 * 13 12 10 25 25 H 1.07995 * 120.10417 * 0.04298 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2098 0.0000 4 6 1.2762 2.3709 0.0006 5 6 1.8638 3.6175 0.0069 6 6 3.2544 3.7361 0.0011 7 6 3.8742 5.0270 0.0015 8 7 4.3659 6.0511 0.0027 9 6 4.0704 2.5188 0.0005 10 6 5.4765 2.5987 0.0009 11 1 5.9672 3.4832 -0.3776 12 6 6.2393 1.5300 0.4929 13 7 5.6856 0.6329 1.2650 14 14 8.0472 1.3885 0.0444 15 1 8.8650 2.1111 1.0515 16 1 8.4410 -0.0431 0.0218 17 1 8.2726 1.9851 -1.2966 18 6 3.4246 1.2691 -0.0005 19 1 -0.3632 0.5138 0.8900 20 1 -0.3632 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 0.1990 2.2928 0.0006 23 1 1.2472 4.5042 0.0119 24 1 6.2283 -0.0647 1.6644 25 1 4.0059 0.3590 -0.0017 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147571999.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:42 Heat of formation + Delta-G solvation = -1.652605 kcal Electronic energy + Delta-G solvation = -12151.676584 eV Core-core repulsion = 9902.130726 eV Total energy + Delta-G solvation = -2249.545857 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.84673 -36.64364 -34.88116 -33.80248 -29.99966 -29.37521 -26.82612 -25.46053 -21.96652 -21.07202 -17.95620 -17.24707 -16.34564 -15.35755 -14.95218 -14.87700 -13.47533 -13.13866 -12.92369 -12.61903 -12.49688 -11.86300 -11.64907 -11.34880 -11.32469 -11.16325 -11.02376 -10.67721 -10.26795 -9.96005 -9.65489 -9.39140 -7.77648 -7.19006 -6.96557 -4.73588 2.25090 2.65378 2.94736 2.98838 3.08478 3.71901 3.95726 4.15546 4.20218 4.49058 5.41355 5.48129 5.59749 5.65938 5.84311 5.92419 6.22061 6.54340 6.74074 6.98959 7.16884 7.40102 7.45609 7.71646 7.75556 8.06264 8.47091 8.47739 8.62861 8.87835 9.79612 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.013309 C = 0.009106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.280031 B = 2103.387763 C = 3074.104882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.327 6.327 3 C 0.157 3.843 4 C -0.327 4.327 5 C 0.003 3.997 6 C -0.210 4.210 7 C 0.304 3.696 8 N -0.515 5.515 9 C 0.174 3.826 10 C -0.429 4.429 11 H 0.088 0.912 12 C 0.076 3.924 13 N -0.757 5.757 14 Si 0.916 3.084 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.255 1.255 18 C -0.203 4.203 19 H 0.048 0.952 20 H 0.047 0.953 21 H 0.084 0.916 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.291 0.709 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -4.337 -1.217 6.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.241 6.241 3 C 0.112 3.888 4 C -0.347 4.347 5 C -0.018 4.018 6 C -0.216 4.216 7 C -0.006 4.006 8 N -0.194 5.194 9 C 0.168 3.832 10 C -0.456 4.456 11 H 0.106 0.894 12 C -0.148 4.148 13 N -0.378 5.378 14 Si 0.739 3.261 15 H -0.190 1.190 16 H -0.195 1.195 17 H -0.179 1.179 18 C -0.223 4.223 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.102 0.898 22 H 0.121 0.879 23 H 0.119 0.881 24 H 0.102 0.898 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.508 -3.202 -1.114 4.878 hybrid contribution 0.247 -0.393 0.002 0.464 sum -3.261 -3.594 -1.112 4.979 Atomic orbital electron populations 1.22816 0.80413 1.02124 1.00770 1.86005 1.19833 1.28989 1.89277 1.18996 0.92326 0.82608 0.94869 1.20232 0.97768 0.92091 1.24609 1.20251 0.92198 0.95807 0.93574 1.16900 0.91877 0.85732 1.27064 1.25750 0.91687 0.92187 0.90930 1.81015 1.09854 1.12918 1.15643 1.18105 0.92073 0.88198 0.84822 1.19747 0.91086 1.01351 1.33437 0.89373 1.26145 1.02293 0.93548 0.92792 1.69723 1.38856 1.10877 1.18380 0.86152 0.80390 0.78753 0.80851 1.18974 1.19502 1.17851 1.20468 0.89470 0.98604 1.13807 0.93379 0.93433 0.89750 0.87888 0.88117 0.89777 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.79 101.05 0.99 1.49 15 2 O -0.33 -6.59 10.47 -19.07 -0.20 -6.79 15 3 C 0.16 3.50 6.66 -39.27 -0.26 3.24 15 4 C -0.33 -6.68 8.98 -39.35 -0.35 -7.03 15 5 C 0.00 0.06 9.75 -39.24 -0.38 -0.33 15 6 C -0.21 -4.97 5.95 -104.13 -0.62 -5.58 15 7 C 0.30 7.30 14.29 -22.47 -0.32 6.98 15 8 N -0.51 -12.63 18.54 41.84 0.78 -11.86 15 9 C 0.17 4.37 5.74 -104.65 -0.60 3.77 15 10 C -0.43 -10.78 8.58 -37.86 -0.32 -11.11 15 11 H 0.09 2.22 7.37 -52.49 -0.39 1.84 15 12 C 0.08 1.77 5.14 -17.30 -0.09 1.68 15 13 N -0.76 -17.98 10.96 55.56 0.61 -17.37 15 14 Si 0.92 17.53 29.60 -169.99 -5.03 12.50 15 15 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 16 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 17 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 18 C -0.20 -4.99 8.63 -38.74 -0.33 -5.33 15 19 H 0.05 0.66 7.62 -51.93 -0.40 0.26 15 20 H 0.05 0.63 7.62 -51.93 -0.40 0.24 15 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.10 1.80 6.17 -52.48 -0.32 1.47 15 23 H 0.10 1.84 8.06 -52.49 -0.42 1.41 15 24 H 0.29 6.18 8.30 -40.82 -0.34 5.84 15 25 H 0.13 3.38 6.16 -52.49 -0.32 3.06 15 LS Contribution 233.85 15.07 3.52 3.52 Total: -1.00 -26.86 233.85 -4.43 -31.29 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -1.81 Total: 0.93 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.30 Total: -12.22 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 1.38 Total: -29.23 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.20 Total: -6.79 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -26.86 -4.43 -31.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147571999.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.636 kcal (2) G-P(sol) polarization free energy of solvation -26.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds