Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.35893 * 125.36757 * 2 1 4 4 H 0.97005 * 124.61444 * 359.97438 * 3 2 1 5 5 C 1.37258 * 110.76738 * 180.02562 * 3 2 1 6 6 N 1.32966 * 133.77114 * 180.02562 * 5 3 2 7 7 C 1.31621 * 120.56096 * 179.97438 * 6 5 3 8 8 N 1.32045 * 122.58723 * 0.02562 * 7 6 5 9 9 C 1.32436 * 121.04503 * 359.97438 * 8 7 6 10 10 C 1.38942 * 118.51939 * 0.25857 * 9 8 7 11 11 C 1.38940 * 125.36685 * 180.02562 * 2 1 3 12 12 C 1.40876 * 127.00477 * 359.97438 * 11 2 1 13 13 H 1.07998 * 119.99836 * 30.14820 * 12 11 2 14 14 C 1.39777 * 120.00186 * 210.14931 * 12 11 2 15 15 N 1.31020 * 120.00008 * 19.15860 * 14 12 11 16 16 Si 1.86802 * 119.99865 * 199.15993 * 14 12 11 17 17 H 1.48499 * 109.47127 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47200 * 119.99942 * 16 14 12 19 19 H 1.48508 * 109.47032 * 239.99672 * 16 14 12 20 20 H 1.09003 * 109.46667 * 89.97756 * 1 2 3 21 21 H 1.08995 * 109.47737 * 209.97713 * 1 2 3 22 22 H 1.09002 * 109.47322 * 329.97853 * 1 2 3 23 23 H 1.08007 * 118.71143 * 179.97438 * 7 6 5 24 24 H 1.07994 * 120.74167 * 179.97438 * 9 8 7 25 25 H 0.97007 * 120.00077 * 176.96456 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2935 1.1081 0.0000 4 1 1.9615 2.0196 -0.0004 5 6 3.6218 0.7622 -0.0006 6 7 4.7539 1.4594 -0.0004 7 6 5.9181 0.8454 -0.0006 8 7 6.0281 -0.4705 -0.0015 9 6 4.9542 -1.2456 -0.0017 10 6 3.7018 -0.6440 -0.0065 11 6 2.3111 -1.1330 -0.0005 12 6 1.8845 -2.4756 -0.0006 13 1 0.9500 -2.7452 -0.4701 14 6 2.6707 -3.4588 0.6069 15 7 3.5838 -3.1188 1.4828 16 14 2.4193 -5.2576 0.1700 17 1 1.3343 -5.3754 -0.8370 18 1 3.6779 -5.8113 -0.3907 19 1 2.0455 -6.0160 1.3909 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3634 -0.8901 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 6.8190 1.4412 -0.0008 24 1 5.0499 -2.3213 -0.0029 25 1 4.0992 -3.8038 1.9369 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198954301.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = 48.884275 kcal Electronic energy + Delta-G solvation = -12613.601323 eV Core-core repulsion = 10398.539660 eV Total energy + Delta-G solvation = -2215.061663 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.19949 -39.15471 -35.74185 -33.88167 -31.94281 -31.67799 -28.75131 -26.64864 -24.33656 -23.27275 -21.17826 -19.35863 -18.22878 -17.50231 -16.70654 -16.25484 -15.98770 -15.27330 -14.54083 -14.26802 -14.10670 -13.63192 -13.31336 -12.91984 -12.86040 -12.73004 -12.49189 -11.90686 -11.38588 -11.12912 -10.89915 -9.88989 -9.56969 -8.74537 -8.40837 -6.07679 0.23076 0.68187 1.37936 1.48075 1.60561 2.07687 2.17290 2.32233 3.13090 3.43593 3.64790 3.81530 4.21077 4.35512 4.69259 4.84101 4.91798 5.00656 5.11932 5.31814 5.42161 5.58699 5.92788 6.16055 6.37277 6.59232 6.82281 7.06374 7.15114 7.56265 8.51280 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.015286 C = 0.010716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.192002 B = 1831.286569 C = 2612.408161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.115 4.115 3 N -0.543 5.543 4 H 0.416 0.584 5 C 0.272 3.728 6 N -0.561 5.561 7 C 0.281 3.719 8 N -0.585 5.585 9 C 0.220 3.780 10 C -0.225 4.225 11 C 0.048 3.952 12 C -0.479 4.479 13 H 0.084 0.916 14 C 0.040 3.960 15 N -0.842 5.842 16 Si 0.972 3.028 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.272 1.272 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.223 0.777 24 H 0.150 0.850 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 2.098 -2.080 3.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.219 4.219 3 N -0.151 5.151 4 H 0.254 0.746 5 C 0.029 3.971 6 N -0.283 5.283 7 C -0.008 4.008 8 N -0.304 5.304 9 C 0.053 3.947 10 C -0.237 4.237 11 C 0.041 3.959 12 C -0.511 4.511 13 H 0.102 0.898 14 C -0.172 4.172 15 N -0.471 5.471 16 Si 0.795 3.205 17 H -0.180 1.180 18 H -0.196 1.196 19 H -0.197 1.197 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.239 0.761 24 H 0.167 0.833 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.653 2.700 -1.953 3.719 hybrid contribution -0.673 -0.801 0.107 1.052 sum -2.326 1.899 -1.846 3.524 Atomic orbital electron populations 1.19896 0.85839 1.02466 1.01681 1.21039 0.93908 0.84100 1.22876 1.40644 1.01171 1.08828 1.64413 0.74636 1.18656 0.86583 0.90688 1.01141 1.67250 0.97164 1.41739 1.22193 1.25010 0.94177 0.88639 0.92999 1.68464 1.33086 1.07287 1.21594 1.22605 0.86444 0.99651 0.86041 1.20922 0.97213 0.94380 1.11172 1.18124 0.87580 0.93243 0.96985 1.18857 1.07022 0.90621 1.34589 0.89802 1.26521 0.93185 1.04998 0.92525 1.69975 1.20314 1.37238 1.19559 0.85296 0.79198 0.76989 0.79052 1.18021 1.19635 1.19690 0.91778 0.91370 0.91142 0.76067 0.83303 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.40 10.22 71.23 0.73 -0.67 15 2 C -0.11 -5.07 7.24 42.10 0.30 -4.77 15 3 N -0.54 -22.77 5.95 -177.82 -1.06 -23.83 15 4 H 0.42 14.11 8.96 -92.70 -0.83 13.28 15 5 C 0.27 13.03 8.45 133.90 1.13 14.16 15 6 N -0.56 -25.01 10.47 -197.54 -2.07 -27.08 15 7 C 0.28 11.65 12.24 180.86 2.21 13.87 15 8 N -0.58 -27.03 10.44 -199.65 -2.08 -29.12 15 9 C 0.22 11.16 10.03 84.77 0.85 12.01 15 10 C -0.23 -11.77 5.80 -20.05 -0.12 -11.89 15 11 C 0.05 2.49 5.73 -20.05 -0.11 2.38 15 12 C -0.48 -24.47 8.86 23.29 0.21 -24.26 15 13 H 0.08 4.07 7.91 -2.91 -0.02 4.05 15 14 C 0.04 1.98 5.00 85.19 0.43 2.41 15 15 N -0.84 -43.56 10.25 21.81 0.22 -43.34 15 16 Si 0.97 37.62 29.60 68.60 2.03 39.66 15 17 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 18 H -0.27 -10.34 7.11 99.48 0.71 -9.63 15 19 H -0.27 -10.20 7.11 99.48 0.71 -9.50 15 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.07 2.39 7.91 -2.39 -0.02 2.37 15 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.22 6.82 8.06 -2.91 -0.02 6.80 15 24 H 0.15 7.69 6.42 -2.91 -0.02 7.67 15 25 H 0.28 13.49 8.30 -92.70 -0.77 12.72 15 Total: -1.00 -60.80 225.46 3.07 -57.73 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.40 Total: 22.73 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.63 Total: 3.25 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -4.99 Total: -123.36 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.66 kcal Total: -60.80 3.07 -57.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198954301.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.615 kcal (2) G-P(sol) polarization free energy of solvation -60.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds