Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35712 * 125.34217 * 2 1 4 4 H 0.96999 * 124.66287 * 359.97438 * 3 2 1 5 5 C 1.37814 * 110.67289 * 179.81908 * 3 2 1 6 6 N 1.32731 * 132.80606 * 180.13255 * 5 3 2 7 7 C 1.31993 * 119.94618 * 180.34056 * 6 5 3 8 8 C 1.38648 * 120.60256 * 0.02562 * 7 6 5 9 9 N 1.32012 * 120.25178 * 359.95684 * 8 7 6 10 10 C 1.32593 * 119.70102 * 0.04984 * 9 8 7 11 11 C 1.38873 * 125.34191 * 180.30831 * 2 1 3 12 12 C 1.40948 * 126.94136 * 359.97438 * 11 2 1 13 13 H 1.08000 * 119.99605 * 0.02562 * 12 11 2 14 14 C 1.39774 * 120.00008 * 179.97438 * 12 11 2 15 15 N 1.31030 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99855 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47116 * 60.00327 * 16 14 12 18 18 H 1.48502 * 109.47004 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47474 * 300.00521 * 16 14 12 20 20 H 1.09002 * 109.47152 * 269.69239 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.69339 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.69320 * 1 2 3 23 23 H 1.08001 * 119.69621 * 180.02562 * 7 6 5 24 24 H 1.08003 * 119.87332 * 179.97438 * 8 7 6 25 25 H 0.97000 * 120.00003 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2921 1.1070 0.0000 4 1 1.9604 2.0185 -0.0004 5 6 3.6253 0.7580 0.0041 6 7 4.7444 1.4717 0.0079 7 6 5.9149 0.8616 0.0046 8 6 5.9892 -0.5228 -0.0035 9 7 4.8862 -1.2481 -0.0070 10 6 3.7045 -0.6467 -0.0039 11 6 2.3103 -1.1328 -0.0061 12 6 1.8814 -2.4754 -0.0128 13 1 0.8261 -2.7051 -0.0140 14 6 2.8218 -3.5095 -0.0190 15 7 4.1021 -3.2308 -0.0180 16 14 2.2533 -5.2889 -0.0272 17 1 1.4345 -5.5414 -1.2401 18 1 3.4364 -6.1864 -0.0323 19 1 1.4371 -5.5534 1.1849 20 1 -0.3633 -0.0055 1.0277 21 1 -0.3633 -0.8872 -0.5186 22 1 -0.3633 0.8928 -0.5091 23 1 6.8230 1.4463 0.0081 24 1 6.9533 -1.0098 -0.0066 25 1 4.7547 -3.9484 -0.0227 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198954322.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = 95.672432 kcal Electronic energy + Delta-G solvation = -12667.551690 eV Core-core repulsion = 10454.518914 eV Total energy + Delta-G solvation = -2213.032776 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.22849 -37.02232 -33.94250 -32.27816 -30.21134 -29.26889 -26.93493 -24.83593 -22.33707 -21.40307 -19.29165 -17.05517 -16.43285 -15.38760 -14.99546 -14.67363 -14.11669 -13.48168 -12.71692 -12.43723 -12.35441 -11.85438 -11.44183 -11.22872 -10.88549 -10.82454 -10.27782 -10.12244 -10.10105 -9.68557 -9.07727 -7.48160 -7.25560 -7.06957 -6.00084 -4.01216 2.23309 2.60482 3.09101 3.16551 3.18310 3.96633 4.00736 4.10536 5.06784 5.51865 5.63276 5.66386 5.98717 6.17744 6.24917 6.45252 6.51026 6.55445 6.83187 6.99256 7.11497 7.32281 8.00855 8.09890 8.45921 8.51619 8.70349 9.00775 9.11394 9.56627 10.42281 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.032433 B = 0.015546 C = 0.010569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.117307 B = 1800.672479 C = 2648.644315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.162 4.162 3 N -0.553 5.553 4 H 0.395 0.605 5 C 0.217 3.783 6 N -0.503 5.503 7 C 0.069 3.931 8 C -0.068 4.068 9 N -0.282 5.282 10 C 0.055 3.945 11 C 0.082 3.918 12 C -0.422 4.422 13 H 0.080 0.920 14 C 0.052 3.948 15 N -0.714 5.714 16 Si 0.903 3.097 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.041 0.959 21 H 0.065 0.935 22 H 0.037 0.963 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 1.932 -0.048 2.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.266 4.266 3 N -0.158 5.158 4 H 0.229 0.771 5 C -0.022 4.022 6 N -0.225 5.225 7 C -0.099 4.099 8 C -0.235 4.235 9 N 0.005 4.995 10 C -0.089 4.089 11 C 0.075 3.925 12 C -0.453 4.453 13 H 0.098 0.902 14 C -0.170 4.170 15 N -0.337 5.337 16 Si 0.728 3.272 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.193 1.193 20 H 0.060 0.940 21 H 0.084 0.916 22 H 0.056 0.944 23 H 0.161 0.839 24 H 0.158 0.842 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.584 1.842 -0.051 1.933 hybrid contribution -0.064 -0.246 0.006 0.254 sum -0.649 1.596 -0.044 1.723 Atomic orbital electron populations 1.19688 0.89328 1.00575 0.99840 1.19749 0.91662 0.84179 1.31051 1.40494 1.01865 1.07617 1.65830 0.77082 1.19293 0.85726 0.92946 1.04283 1.67059 0.96839 1.40092 1.18505 1.23027 0.93916 0.94276 0.98718 1.23582 0.98924 0.91609 1.09409 1.69140 0.95892 1.34470 1.00021 1.20747 0.94018 0.88517 1.05608 1.17718 0.86210 0.92127 0.96494 1.18814 0.94188 0.88891 1.43364 0.90156 1.26238 0.95371 1.01022 0.94330 1.70567 1.00096 1.32226 1.30790 0.86457 0.78863 0.82311 0.79533 1.19296 1.20481 1.19295 0.94038 0.91590 0.94447 0.83932 0.84219 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.69 10.19 36.01 0.37 -0.32 15 2 C -0.16 -3.80 7.23 -80.64 -0.58 -4.39 15 3 N -0.55 -12.45 5.97 -7.56 -0.05 -12.50 15 4 H 0.39 7.47 8.96 -40.82 -0.37 7.10 15 5 C 0.22 5.46 8.39 -155.29 -1.30 4.16 15 6 N -0.50 -11.76 10.52 -12.10 -0.13 -11.89 15 7 C 0.07 1.43 11.20 -17.33 -0.19 1.23 15 8 C -0.07 -1.50 11.21 -17.32 -0.19 -1.70 15 9 N -0.28 -7.44 6.70 -9.51 -0.06 -7.50 15 10 C 0.06 1.52 6.82 -82.77 -0.56 0.95 15 11 C 0.08 2.20 6.08 -104.79 -0.64 1.56 15 12 C -0.42 -11.14 9.07 -37.98 -0.34 -11.48 15 13 H 0.08 1.97 7.25 -52.49 -0.38 1.59 15 14 C 0.05 1.32 5.49 -17.32 -0.10 1.23 15 15 N -0.71 -18.93 8.86 55.54 0.49 -18.44 15 16 Si 0.90 18.87 29.56 -169.99 -5.02 13.85 15 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 19 H -0.27 -5.54 7.11 56.52 0.40 -5.13 15 20 H 0.04 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.07 1.22 7.48 -51.93 -0.39 0.83 15 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.14 2.31 8.06 -52.49 -0.42 1.89 15 24 H 0.14 2.60 8.06 -52.48 -0.42 2.18 15 25 H 0.27 6.75 8.30 -40.82 -0.34 6.41 15 LS Contribution 223.00 15.07 3.36 3.36 Total: -1.00 -30.07 223.00 -6.92 -36.99 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -1.96 Total: 4.87 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.55 Total: -8.75 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.26 Total: -50.32 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.07 -6.92 -36.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198954322.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.664 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds