Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35712 * 125.34217 * 2 1 4 4 H 0.96999 * 124.66287 * 359.97438 * 3 2 1 5 5 C 1.37814 * 110.67289 * 179.81908 * 3 2 1 6 6 N 1.32731 * 132.80606 * 180.13255 * 5 3 2 7 7 C 1.31993 * 119.94618 * 180.34056 * 6 5 3 8 8 C 1.38648 * 120.60256 * 0.02562 * 7 6 5 9 9 N 1.32012 * 120.25178 * 359.95684 * 8 7 6 10 10 C 1.32593 * 119.70102 * 0.04984 * 9 8 7 11 11 C 1.38873 * 125.34191 * 180.30831 * 2 1 3 12 12 C 1.40948 * 126.94136 * 359.97438 * 11 2 1 13 13 H 1.08000 * 119.99605 * 0.02562 * 12 11 2 14 14 C 1.39774 * 120.00008 * 179.97438 * 12 11 2 15 15 N 1.31030 * 120.00173 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99855 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47116 * 60.00327 * 16 14 12 18 18 H 1.48502 * 109.47004 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47474 * 300.00521 * 16 14 12 20 20 H 1.09002 * 109.47152 * 269.69239 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.69339 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.69320 * 1 2 3 23 23 H 1.08001 * 119.69621 * 180.02562 * 7 6 5 24 24 H 1.08003 * 119.87332 * 179.97438 * 8 7 6 25 25 H 0.97000 * 120.00003 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2921 1.1070 0.0000 4 1 1.9604 2.0185 -0.0004 5 6 3.6253 0.7580 0.0041 6 7 4.7444 1.4717 0.0079 7 6 5.9149 0.8616 0.0046 8 6 5.9892 -0.5228 -0.0035 9 7 4.8862 -1.2481 -0.0070 10 6 3.7045 -0.6467 -0.0039 11 6 2.3103 -1.1328 -0.0061 12 6 1.8814 -2.4754 -0.0128 13 1 0.8261 -2.7051 -0.0140 14 6 2.8218 -3.5095 -0.0190 15 7 4.1021 -3.2308 -0.0180 16 14 2.2533 -5.2889 -0.0272 17 1 1.4345 -5.5414 -1.2401 18 1 3.4364 -6.1864 -0.0323 19 1 1.4371 -5.5534 1.1849 20 1 -0.3633 -0.0055 1.0277 21 1 -0.3633 -0.8872 -0.5186 22 1 -0.3633 0.8928 -0.5091 23 1 6.8230 1.4463 0.0081 24 1 6.9533 -1.0098 -0.0066 25 1 4.7547 -3.9484 -0.0227 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198954322.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = 76.278109 kcal Electronic energy + Delta-G solvation = -12668.392691 eV Core-core repulsion = 10454.518914 eV Total energy + Delta-G solvation = -2213.873777 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.03368 -38.81726 -35.76920 -34.10464 -31.92225 -31.09656 -28.63745 -26.69051 -24.13464 -23.19181 -21.12251 -18.85914 -18.29853 -17.15063 -16.76530 -16.42654 -15.93818 -15.16698 -14.43673 -14.05743 -14.03633 -13.57624 -13.12138 -12.91708 -12.58475 -12.46428 -12.04010 -11.92046 -11.89324 -11.50918 -10.91667 -9.28494 -9.09666 -8.90368 -7.81243 -5.90708 0.45974 0.78114 1.43384 1.46188 1.56598 2.14450 2.27695 2.36404 3.23276 3.74656 3.89228 3.96397 4.21958 4.62144 4.64032 4.80551 4.86954 5.03608 5.16051 5.29894 5.40808 5.48440 6.18765 6.23586 6.62059 6.72095 6.87906 7.11577 7.34773 7.76845 8.61564 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.032433 B = 0.015546 C = 0.010569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.117307 B = 1800.672479 C = 2648.644315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.143 4.143 3 N -0.542 5.542 4 H 0.413 0.587 5 C 0.190 3.810 6 N -0.505 5.505 7 C 0.079 3.921 8 C -0.070 4.070 9 N -0.314 5.314 10 C 0.007 3.993 11 C 0.028 3.972 12 C -0.458 4.458 13 H 0.085 0.915 14 C 0.006 3.994 15 N -0.748 5.748 16 Si 0.976 3.024 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.197 0.803 24 H 0.174 0.826 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 2.604 -0.047 2.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.249 4.249 3 N -0.149 5.149 4 H 0.250 0.750 5 C -0.048 4.048 6 N -0.227 5.227 7 C -0.090 4.090 8 C -0.239 4.239 9 N -0.028 5.028 10 C -0.134 4.134 11 C 0.021 3.979 12 C -0.489 4.489 13 H 0.103 0.897 14 C -0.212 4.212 15 N -0.372 5.372 16 Si 0.798 3.202 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.188 1.188 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.214 0.786 24 H 0.191 0.809 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.691 2.547 -0.049 2.639 hybrid contribution 0.044 -0.265 0.009 0.269 sum -0.647 2.282 -0.040 2.372 Atomic orbital electron populations 1.19814 0.86000 1.02181 1.01316 1.20504 0.93646 0.83682 1.27063 1.40496 1.01169 1.08390 1.64800 0.75008 1.19475 0.86949 0.92689 1.05723 1.67210 0.97073 1.40004 1.18453 1.23845 0.94819 0.94428 0.95939 1.24269 0.99233 0.92684 1.07741 1.69062 0.96707 1.36121 1.00921 1.21038 0.94590 0.89812 1.08000 1.18289 0.87330 0.93556 0.98752 1.19075 0.94703 0.89564 1.45545 0.89651 1.27020 0.95425 1.04982 0.93780 1.70772 1.01000 1.33114 1.32346 0.85353 0.78318 0.76954 0.79547 1.18813 1.20110 1.18850 0.92404 0.91543 0.91241 0.78611 0.80913 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.26 10.19 71.24 0.73 -0.54 15 2 C -0.14 -6.64 7.23 42.11 0.30 -6.33 15 3 N -0.54 -23.94 5.97 -177.84 -1.06 -25.00 15 4 H 0.41 14.87 8.96 -92.71 -0.83 14.04 15 5 C 0.19 9.51 8.39 133.75 1.12 10.63 15 6 N -0.51 -22.82 10.52 -192.20 -2.02 -24.84 15 7 C 0.08 3.08 11.20 84.77 0.95 4.03 15 8 C -0.07 -3.02 11.21 84.76 0.95 -2.07 15 9 N -0.31 -16.83 6.70 -184.00 -1.23 -18.06 15 10 C 0.01 0.42 6.82 42.12 0.29 0.70 15 11 C 0.03 1.52 6.08 -19.98 -0.12 1.40 15 12 C -0.46 -24.84 9.07 23.31 0.21 -24.63 15 13 H 0.09 4.29 7.25 -2.91 -0.02 4.27 15 14 C 0.01 0.29 5.49 85.18 0.47 0.76 15 15 N -0.75 -40.92 8.86 21.81 0.19 -40.73 15 16 Si 0.98 39.55 29.56 68.60 2.03 41.58 15 17 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 18 H -0.28 -10.85 7.11 99.48 0.71 -10.14 15 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 20 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.07 2.37 7.48 -2.39 -0.02 2.35 15 22 H 0.07 2.01 8.14 -2.38 -0.02 1.99 15 23 H 0.20 5.43 8.06 -2.91 -0.02 5.40 15 24 H 0.17 6.05 8.06 -2.91 -0.02 6.03 15 25 H 0.27 13.86 8.30 -92.71 -0.77 13.09 15 Total: -1.00 -66.66 223.00 3.20 -63.47 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.40 Total: 19.62 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.90 Total: -16.04 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -4.12 Total: -108.63 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -66.66 3.20 -63.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198954322.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.747 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds