Wall clock time and date at job start Mon Mar 30 2020 02:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00025 * 2 1 4 4 H 1.48502 * 109.47486 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47013 * 299.99585 * 3 2 1 6 6 H 1.48500 * 109.47245 * 59.99524 * 3 2 1 7 7 C 1.37880 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99986 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00001 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.79708 * 300.49327 * 9 7 2 11 11 C 1.52902 * 109.63596 * 179.97438 * 9 7 2 12 12 C 1.50716 * 109.94878 * 189.85058 * 11 9 7 13 13 C 1.38680 * 118.47962 * 196.77157 * 12 11 9 14 14 C 1.38032 * 120.34736 * 180.37675 * 13 12 11 15 15 C 1.38259 * 119.82420 * 0.02562 * 14 13 12 16 16 C 1.38018 * 119.87215 * 359.90707 * 15 14 13 17 17 C 1.37823 * 121.66353 * 17.00539 * 12 11 9 18 18 C 1.50626 * 121.85217 * 359.47172 * 17 12 11 19 19 N 1.46633 * 110.49885 * 17.53528 * 18 17 12 20 20 H 0.96996 * 120.00146 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.38849 * 69.69766 * 11 9 7 22 22 H 1.09004 * 109.38760 * 309.99316 * 11 9 7 23 23 H 1.08004 * 119.82810 * 0.39999 * 13 12 11 24 24 H 1.08000 * 120.08862 * 180.02562 * 14 13 12 25 25 H 1.08006 * 120.06650 * 179.90078 * 15 14 13 26 26 H 1.07999 * 119.81155 * 180.02562 * 16 15 14 27 27 H 1.09001 * 109.27087 * 137.79357 * 18 17 12 28 28 H 1.08991 * 109.27061 * 257.27444 * 18 17 12 29 29 H 1.00896 * 111.00075 * 70.94612 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6155 -2.5584 0.8840 11 6 2.2413 -3.6642 0.0005 12 6 1.5108 -4.9600 -0.2418 13 6 2.1539 -6.1493 0.0665 14 6 1.5237 -7.3586 -0.1473 15 6 0.2449 -7.3843 -0.6721 16 6 -0.3965 -6.2011 -0.9780 17 6 0.2346 -4.9847 -0.7617 18 6 -0.5079 -3.7204 -1.1065 19 7 0.4218 -2.5913 -1.2117 20 1 -0.4850 0.8400 -0.0004 21 1 2.7475 -3.7088 0.9648 22 1 2.9792 -3.5119 -0.7872 23 1 3.1529 -6.1293 0.4764 24 1 2.0283 -8.2824 0.0947 25 1 -0.2513 -8.3284 -0.8425 26 1 -1.3956 -6.2223 -1.3875 27 1 -1.0217 -3.8532 -2.0586 28 1 -1.2418 -3.5107 -0.3284 29 1 0.9960 -2.6715 -2.0374 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205772157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:21 Heat of formation + Delta-G solvation = 1.723473 kcal Electronic energy + Delta-G solvation = -12712.277601 eV Core-core repulsion = 10598.711235 eV Total energy + Delta-G solvation = -2113.566365 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.82385 -37.46855 -34.42235 -33.36858 -31.34007 -30.12478 -26.91498 -25.01653 -23.18529 -22.96869 -20.66067 -18.67760 -17.16358 -16.63108 -16.12613 -15.91728 -15.38569 -15.25880 -14.42632 -14.36242 -13.89129 -13.78762 -13.19719 -12.85008 -12.57359 -12.44463 -12.29312 -12.10740 -11.83274 -11.62806 -10.92466 -10.52840 -9.62129 -9.40290 -8.71105 -7.96822 -6.18417 0.50595 0.51862 1.44195 1.46108 1.56860 2.48271 2.89178 3.24220 3.92425 4.00196 4.09286 4.15977 4.27174 4.49216 4.50888 4.61246 4.78930 4.87959 4.91177 5.04298 5.19892 5.27854 5.46785 5.61184 5.63103 5.78806 5.88590 6.17509 6.22967 6.61145 7.01826 7.11280 7.54480 9.07541 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.068823 B = 0.008811 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.745411 B = 3177.111331 C = 3502.706683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.034 3.966 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.224 3.776 10 H -0.002 1.002 11 C -0.101 4.101 12 C -0.094 4.094 13 C -0.134 4.134 14 C -0.125 4.125 15 C -0.128 4.128 16 C -0.124 4.124 17 C -0.131 4.131 18 C 0.098 3.902 19 N -0.661 5.661 20 H 0.255 0.745 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.129 0.871 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.137 0.863 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 -12.468 -1.824 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.169 4.169 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.589 4.589 8 H 0.072 0.928 9 C 0.116 3.884 10 H 0.016 0.984 11 C -0.140 4.140 12 C -0.095 4.095 13 C -0.152 4.152 14 C -0.143 4.143 15 C -0.146 4.146 16 C -0.143 4.143 17 C -0.133 4.133 18 C -0.033 4.033 19 N -0.287 5.287 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.147 0.853 24 H 0.167 0.833 25 H 0.169 0.831 26 H 0.155 0.845 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.703 -11.854 -1.607 11.983 hybrid contribution 0.863 0.412 0.037 0.957 sum 1.566 -11.442 -1.570 11.655 Atomic orbital electron populations 1.70231 1.07251 1.26354 1.48208 1.25714 0.95408 1.02013 0.93807 0.85637 0.79151 0.80090 0.77368 1.19166 1.20819 1.20852 1.21350 0.92469 0.91554 1.53562 0.92807 1.18902 0.89138 0.91631 0.88724 0.98425 1.21162 0.98810 0.93043 1.01010 1.19992 0.94761 0.95770 0.98936 1.21340 1.00528 0.92100 1.01212 1.21402 0.95664 0.97900 0.99345 1.21419 0.95412 0.98529 0.99238 1.21360 1.00570 0.91662 1.00678 1.20887 0.95128 0.97476 0.99840 1.20915 0.95516 0.86070 1.00755 1.61115 1.22694 1.39969 1.04958 0.93597 0.91792 0.91727 0.85303 0.83295 0.83143 0.84534 0.89745 0.92705 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.72 12.82 21.45 0.27 -52.44 15 2 C 0.03 1.91 5.39 84.66 0.46 2.37 15 3 Si 0.95 44.13 29.54 68.60 2.03 46.16 15 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 7 C -0.55 -30.85 8.75 25.60 0.22 -30.62 15 8 H 0.05 2.94 7.75 -2.91 -0.02 2.92 15 9 C 0.22 11.61 2.29 44.08 0.10 11.71 15 10 H 0.00 -0.13 8.05 -2.39 -0.02 -0.15 15 11 C -0.10 -4.36 5.08 29.82 0.15 -4.21 15 12 C -0.09 -3.59 5.77 -19.85 -0.11 -3.71 15 13 C -0.13 -4.17 9.66 22.33 0.22 -3.95 15 14 C -0.13 -3.19 10.05 22.23 0.22 -2.97 15 15 C -0.13 -3.19 10.05 22.22 0.22 -2.97 15 16 C -0.12 -3.68 9.65 22.34 0.22 -3.46 15 17 C -0.13 -4.86 5.79 -19.87 -0.12 -4.98 15 18 C 0.10 4.02 6.34 85.58 0.54 4.56 15 19 N -0.66 -32.26 5.94 -499.82 -2.97 -35.23 15 20 H 0.26 14.46 8.31 -92.71 -0.77 13.68 15 21 H 0.06 2.67 8.14 -2.39 -0.02 2.65 15 22 H 0.06 2.74 8.11 -2.38 -0.02 2.72 15 23 H 0.13 3.54 8.06 -2.91 -0.02 3.52 15 24 H 0.15 2.73 8.06 -2.91 -0.02 2.71 15 25 H 0.15 2.65 8.06 -2.91 -0.02 2.62 15 26 H 0.14 3.38 8.06 -2.91 -0.02 3.35 15 27 H 0.08 3.04 8.13 -2.39 -0.02 3.02 15 28 H 0.05 2.44 8.14 -2.39 -0.02 2.42 15 29 H 0.32 15.01 8.74 -89.70 -0.78 14.22 15 Total: -1.00 -63.50 246.04 1.81 -61.69 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.35 Total: 18.05 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 2.12 Total: -38.24 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -2.70 Total: -87.67 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.50 1.81 -61.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205772157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.418 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds