Wall clock time and date at job start Mon Mar 30 2020 01:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38685 * 119.85692 * 2 1 4 4 C 1.37835 * 120.54627 * 179.74706 * 3 2 1 5 5 C 1.39030 * 119.94467 * 359.97438 * 4 3 2 6 6 O 1.34933 * 132.99082 * 180.02562 * 5 4 3 7 7 N 1.41318 * 109.72363 * 179.97438 * 6 5 4 8 8 C 1.31913 * 109.37038 * 0.02562 * 7 6 5 9 9 C 1.41189 * 126.53550 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99535 * 179.97438 * 9 8 7 11 11 C 1.40153 * 120.00342 * 359.96881 * 9 8 7 12 12 N 1.30669 * 119.99815 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00065 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47267 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47110 * 120.00165 * 13 11 9 16 16 H 1.48502 * 109.47437 * 240.00533 * 13 11 9 17 17 C 1.40166 * 119.48066 * 359.97438 * 5 4 3 18 18 C 1.37829 * 119.85721 * 179.73284 * 2 1 3 19 19 H 1.09001 * 109.47610 * 89.99612 * 1 2 3 20 20 H 1.08995 * 109.47352 * 210.00197 * 1 2 3 21 21 H 1.09008 * 109.47262 * 329.99349 * 1 2 3 22 22 H 1.08000 * 119.72454 * 359.72548 * 3 2 1 23 23 H 1.08003 * 120.02416 * 179.97438 * 4 3 2 24 24 H 0.96998 * 119.99791 * 179.97438 * 12 11 9 25 25 H 1.07996 * 120.13373 * 0.24714 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.2028 0.0000 4 6 3.5756 1.2194 0.0052 5 6 4.2841 0.0231 0.0111 6 8 5.6021 -0.2656 0.0174 7 7 5.7833 -1.6672 0.0221 8 6 4.6052 -2.2606 0.0184 9 6 4.3649 -3.6519 0.0217 10 1 3.3513 -4.0248 0.0185 11 6 5.4417 -4.5491 0.0290 12 7 6.6680 -4.0979 0.0333 13 14 5.1237 -6.3897 0.0341 14 1 3.6597 -6.6392 0.0286 15 1 5.7340 -7.0009 -1.1738 16 1 5.7243 -6.9926 1.2512 17 6 3.5857 -1.1922 0.0122 18 6 2.1932 -1.1953 0.0056 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5140 22 1 1.6506 2.1341 -0.0045 23 1 4.1048 2.1609 0.0048 24 1 7.4132 -4.7188 0.0388 25 1 1.6530 -2.1305 0.0059 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214024546.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:56 Heat of formation + Delta-G solvation = 35.524484 kcal Electronic energy + Delta-G solvation = -12261.867525 eV Core-core repulsion = 10013.933787 eV Total energy + Delta-G solvation = -2247.933738 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.97261 -36.87492 -34.16201 -31.64926 -31.22902 -29.03079 -26.43034 -25.72184 -22.19744 -20.82316 -20.09518 -17.25366 -15.83809 -15.48265 -14.89307 -14.46082 -14.28016 -13.34718 -13.11451 -12.94482 -12.57029 -11.85240 -11.60528 -11.43973 -11.16051 -10.92169 -10.77856 -10.35174 -10.13307 -10.03982 -9.15840 -8.94731 -7.77710 -7.44105 -6.80312 -4.88185 1.79890 2.14524 2.92519 3.03025 3.08476 3.79168 3.84931 4.40932 4.42638 5.22187 5.35900 5.40029 5.59858 5.82527 5.84881 5.91210 6.06682 6.20553 6.22094 6.74824 6.77742 6.94560 7.07081 7.13964 7.21774 7.61744 8.03734 8.39990 8.62662 9.47355 10.15745 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.043727 B = 0.010449 C = 0.008472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.177386 B = 2679.053160 C = 3304.085124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.155 4.155 3 C -0.084 4.084 4 C -0.153 4.153 5 C 0.084 3.916 6 O -0.163 6.163 7 N -0.356 5.356 8 C 0.212 3.788 9 C -0.421 4.421 10 H 0.093 0.907 11 C 0.065 3.935 12 N -0.747 5.747 13 Si 0.923 3.077 14 H -0.258 1.258 15 H -0.271 1.271 16 H -0.271 1.271 17 C -0.174 4.174 18 C -0.045 4.045 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.120 0.880 23 H 0.120 0.880 24 H 0.283 0.717 25 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 2.617 -0.041 9.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C -0.103 4.103 4 C -0.173 4.173 5 C 0.028 3.972 6 O -0.157 6.157 7 N -0.131 5.131 8 C 0.055 3.945 9 C -0.460 4.460 10 H 0.111 0.889 11 C -0.159 4.159 12 N -0.373 5.373 13 Si 0.746 3.254 14 H -0.182 1.182 15 H -0.196 1.196 16 H -0.196 1.196 17 C -0.177 4.177 18 C -0.065 4.065 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.138 0.862 23 H 0.138 0.862 24 H 0.094 0.906 25 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.275 2.691 -0.033 7.757 hybrid contribution -0.802 -0.774 -0.009 1.115 sum -8.077 1.918 -0.042 8.301 Atomic orbital electron populations 1.20586 0.91629 1.01865 1.01387 1.19506 0.95494 0.92815 1.07696 1.20613 0.92797 0.97115 0.99776 1.19843 0.93204 0.94829 1.09466 1.20429 0.87468 0.94504 0.94781 1.89051 1.18063 1.27130 1.81445 1.81370 1.14317 0.77303 1.40068 1.21122 0.87657 0.93720 0.91976 1.18896 0.94761 0.87033 1.45337 0.88922 1.26039 0.94443 1.02139 0.93233 1.69818 0.99342 1.37455 1.30640 0.86009 0.79968 0.80672 0.78706 1.18188 1.19639 1.19633 1.21311 0.94911 0.92899 1.08622 1.20446 0.92097 0.97309 0.96645 0.92181 0.92152 0.92344 0.86204 0.86208 0.90561 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.01 36.00 0.36 -0.90 15 2 C -0.15 -2.69 5.88 -104.61 -0.62 -3.31 15 3 C -0.08 -1.43 9.67 -39.56 -0.38 -1.81 15 4 C -0.15 -3.03 10.07 -39.44 -0.40 -3.43 15 5 C 0.08 2.07 7.45 -38.56 -0.29 1.79 15 6 O -0.16 -4.61 12.04 7.38 0.09 -4.53 15 7 N -0.36 -10.80 11.13 33.37 0.37 -10.43 15 8 C 0.21 6.01 6.95 -82.85 -0.58 5.44 15 9 C -0.42 -11.26 9.44 -37.74 -0.36 -11.61 15 10 H 0.09 2.24 7.85 -52.48 -0.41 1.83 15 11 C 0.07 1.68 5.50 -17.33 -0.10 1.58 15 12 N -0.75 -20.50 11.97 55.56 0.66 -19.83 15 13 Si 0.92 18.44 29.56 -169.99 -5.02 13.41 15 14 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 15 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 16 H -0.27 -5.33 7.11 56.52 0.40 -4.92 15 17 C -0.17 -4.35 6.30 -104.94 -0.66 -5.01 15 18 C -0.05 -0.93 9.73 -39.35 -0.38 -1.31 15 19 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 20 H 0.06 0.73 8.08 -51.93 -0.42 0.31 15 21 H 0.06 0.65 8.08 -51.92 -0.42 0.23 15 22 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 23 H 0.12 2.05 8.06 -52.48 -0.42 1.63 15 24 H 0.28 6.95 8.29 -40.82 -0.34 6.61 15 25 H 0.12 2.23 8.06 -52.49 -0.42 1.81 15 LS Contribution 231.64 15.07 3.49 3.49 Total: -1.00 -31.13 231.64 -5.88 -37.01 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -2.08 Total: -0.53 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -3.39 Total: -18.59 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 1.04 Total: -30.26 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.09 Total: -4.53 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.13 -5.88 -37.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214024546.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.535 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds