Wall clock time and date at job start Mon Mar 30 2020 01:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38685 * 119.85692 * 2 1 4 4 C 1.37835 * 120.54627 * 179.74706 * 3 2 1 5 5 C 1.39030 * 119.94467 * 359.97438 * 4 3 2 6 6 O 1.34933 * 132.99082 * 180.02562 * 5 4 3 7 7 N 1.41318 * 109.72363 * 179.97438 * 6 5 4 8 8 C 1.31913 * 109.37038 * 0.02562 * 7 6 5 9 9 C 1.41189 * 126.53550 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99535 * 179.97438 * 9 8 7 11 11 C 1.40153 * 120.00342 * 359.96881 * 9 8 7 12 12 N 1.30669 * 119.99815 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00065 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47267 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47110 * 120.00165 * 13 11 9 16 16 H 1.48502 * 109.47437 * 240.00533 * 13 11 9 17 17 C 1.40166 * 119.48066 * 359.97438 * 5 4 3 18 18 C 1.37829 * 119.85721 * 179.73284 * 2 1 3 19 19 H 1.09001 * 109.47610 * 89.99612 * 1 2 3 20 20 H 1.08995 * 109.47352 * 210.00197 * 1 2 3 21 21 H 1.09008 * 109.47262 * 329.99349 * 1 2 3 22 22 H 1.08000 * 119.72454 * 359.72548 * 3 2 1 23 23 H 1.08003 * 120.02416 * 179.97438 * 4 3 2 24 24 H 0.96998 * 119.99791 * 179.97438 * 12 11 9 25 25 H 1.07996 * 120.13373 * 0.24714 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.2028 0.0000 4 6 3.5756 1.2194 0.0052 5 6 4.2841 0.0231 0.0111 6 8 5.6021 -0.2656 0.0174 7 7 5.7833 -1.6672 0.0221 8 6 4.6052 -2.2606 0.0184 9 6 4.3649 -3.6519 0.0217 10 1 3.3513 -4.0248 0.0185 11 6 5.4417 -4.5491 0.0290 12 7 6.6680 -4.0979 0.0333 13 14 5.1237 -6.3897 0.0341 14 1 3.6597 -6.6392 0.0286 15 1 5.7340 -7.0009 -1.1738 16 1 5.7243 -6.9926 1.2512 17 6 3.5857 -1.1922 0.0122 18 6 2.1932 -1.1953 0.0056 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5140 22 1 1.6506 2.1341 -0.0045 23 1 4.1048 2.1609 0.0048 24 1 7.4132 -4.7188 0.0388 25 1 1.6530 -2.1305 0.0059 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214024546.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:56 Heat of formation + Delta-G solvation = 15.376861 kcal Electronic energy + Delta-G solvation = -12262.741192 eV Core-core repulsion = 10013.933787 eV Total energy + Delta-G solvation = -2248.807404 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.77733 -38.50695 -36.12220 -33.53678 -32.68490 -30.75308 -28.42475 -27.14328 -23.87021 -22.52780 -21.91604 -19.12541 -17.66424 -17.22532 -16.58030 -16.19604 -15.94614 -15.00781 -14.55955 -14.26246 -14.20038 -13.35005 -13.14109 -12.99266 -12.77451 -12.60663 -12.26125 -11.96943 -11.95250 -11.66160 -11.16304 -10.83103 -9.54336 -9.09291 -8.72236 -6.96206 0.16338 0.53766 1.31267 1.38222 1.58304 1.93742 2.16392 2.63109 2.76849 3.26052 3.88759 4.02680 4.10096 4.22230 4.44621 4.60837 4.81594 4.95143 4.97935 5.10922 5.19775 5.32624 5.40189 5.55102 5.68479 5.96057 6.16751 6.43614 6.61360 7.49255 8.27307 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.043727 B = 0.010449 C = 0.008472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.177386 B = 2679.053160 C = 3304.085124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.135 4.135 3 C -0.067 4.067 4 C -0.153 4.153 5 C 0.039 3.961 6 O -0.194 6.194 7 N -0.413 5.413 8 C 0.182 3.818 9 C -0.446 4.446 10 H 0.111 0.889 11 C 0.015 3.985 12 N -0.795 5.795 13 Si 1.012 2.988 14 H -0.241 1.241 15 H -0.264 1.264 16 H -0.264 1.264 17 C -0.209 4.209 18 C -0.060 4.060 19 H 0.079 0.921 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.175 0.825 23 H 0.145 0.855 24 H 0.291 0.709 25 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.220 2.757 -0.052 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.136 4.136 3 C -0.086 4.086 4 C -0.173 4.173 5 C -0.015 4.015 6 O -0.190 6.190 7 N -0.189 5.189 8 C 0.027 3.973 9 C -0.485 4.485 10 H 0.129 0.871 11 C -0.204 4.204 12 N -0.421 5.421 13 Si 0.829 3.171 14 H -0.163 1.163 15 H -0.189 1.189 16 H -0.189 1.189 17 C -0.212 4.212 18 C -0.079 4.079 19 H 0.097 0.903 20 H 0.087 0.913 21 H 0.106 0.894 22 H 0.192 0.808 23 H 0.162 0.838 24 H 0.102 0.898 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.724 2.865 -0.044 11.101 hybrid contribution 0.109 -0.649 -0.009 0.658 sum -10.615 2.216 -0.053 10.844 Atomic orbital electron populations 1.20709 0.87535 1.03860 1.03180 1.20149 0.98238 0.91559 1.03625 1.21275 0.91600 0.99280 0.96440 1.20358 0.94564 0.94021 1.08328 1.21085 0.86282 0.96547 0.97537 1.88902 1.20593 1.26195 1.83317 1.81207 1.16434 0.78695 1.42559 1.21728 0.88664 0.95301 0.91635 1.19472 0.96227 0.87079 1.45719 0.87081 1.27323 0.93537 1.08053 0.91523 1.69956 1.00856 1.39966 1.31360 0.84723 0.80740 0.72628 0.78964 1.16337 1.18873 1.18866 1.21463 0.96600 0.91904 1.11262 1.20759 0.90349 0.99629 0.97164 0.90277 0.91251 0.89427 0.80789 0.83762 0.89822 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 10.01 71.24 0.71 -1.23 15 2 C -0.14 -4.20 5.88 -19.85 -0.12 -4.31 15 3 C -0.07 -2.01 9.67 22.28 0.22 -1.79 15 4 C -0.15 -5.83 10.07 22.36 0.23 -5.61 15 5 C 0.04 2.01 7.45 22.93 0.17 2.18 15 6 O -0.19 -11.77 12.04 28.81 0.35 -11.42 15 7 N -0.41 -26.91 11.13 -48.34 -0.54 -27.45 15 8 C 0.18 10.94 6.95 42.35 0.29 11.23 15 9 C -0.45 -24.70 9.44 23.46 0.22 -24.48 15 10 H 0.11 5.45 7.85 -2.91 -0.02 5.43 15 11 C 0.02 0.80 5.50 85.33 0.47 1.26 15 12 N -0.79 -45.69 11.97 21.86 0.26 -45.43 15 13 Si 1.01 37.81 29.56 68.60 2.03 39.83 15 14 H -0.24 -8.22 7.11 99.48 0.71 -7.51 15 15 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 16 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 17 C -0.21 -10.80 6.30 -20.07 -0.13 -10.93 15 18 C -0.06 -2.39 9.73 22.42 0.22 -2.17 15 19 H 0.08 1.39 8.14 -2.39 -0.02 1.37 15 20 H 0.07 1.33 8.08 -2.39 -0.02 1.31 15 21 H 0.09 1.33 8.08 -2.38 -0.02 1.31 15 22 H 0.17 3.37 8.06 -2.91 -0.02 3.35 15 23 H 0.14 4.65 8.06 -2.91 -0.02 4.63 15 24 H 0.29 14.90 8.29 -92.71 -0.77 14.13 15 25 H 0.13 4.81 8.06 -2.91 -0.02 4.79 15 Total: -1.00 -74.66 231.64 5.58 -69.07 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.20 Total: 11.24 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 2.28 Total: -35.84 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -0.28 Total: -72.88 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.35 Total: -11.42 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.83 kcal Total: -74.66 5.58 -69.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214024546.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.450 kcal (2) G-P(sol) polarization free energy of solvation -74.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds