Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30269 * 124.94774 * 2 1 4 4 C 1.34582 * 108.93505 * 180.02562 * 3 2 1 5 5 C 1.40185 * 106.89079 * 0.22801 * 4 3 2 6 6 C 1.38663 * 119.90561 * 180.36603 * 5 4 3 7 7 C 1.38483 * 121.00325 * 359.71290 * 6 5 4 8 8 C 1.37608 * 121.43156 * 0.02562 * 7 6 5 9 9 C 1.40817 * 120.05271 * 359.97438 * 8 7 6 10 10 C 1.40715 * 120.69895 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99834 * 154.83244 * 10 9 8 12 12 C 1.40065 * 120.00295 * 334.82197 * 10 9 8 13 13 N 1.30798 * 119.99755 * 334.26093 * 12 10 9 14 14 Si 1.86795 * 120.00082 * 154.25865 * 12 10 9 15 15 H 1.48500 * 109.47151 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47434 * 300.00505 * 14 12 10 17 17 H 1.48500 * 109.46901 * 60.00509 * 14 12 10 18 18 O 1.34192 * 124.94084 * 180.62696 * 2 1 3 19 19 H 1.08999 * 109.46775 * 90.00517 * 1 2 3 20 20 H 1.08999 * 109.47285 * 210.00421 * 1 2 3 21 21 H 1.08997 * 109.47028 * 330.00474 * 1 2 3 22 22 H 1.08001 * 119.49696 * 179.68765 * 6 5 4 23 23 H 1.07997 * 119.27568 * 179.97438 * 7 6 5 24 24 H 1.08005 * 119.97525 * 179.97438 * 8 7 6 25 25 H 0.96999 * 120.00143 * 354.40803 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2532 1.0678 0.0000 4 6 3.5468 0.6965 -0.0006 5 6 3.5683 -0.7051 -0.0063 6 6 4.7807 -1.3780 -0.0005 7 6 5.9804 -0.6863 0.0050 8 6 6.0156 0.6894 0.0054 9 6 4.8151 1.4255 -0.0003 10 6 4.8352 2.8325 -0.0005 11 1 3.9983 3.3844 -0.4023 12 6 5.9404 3.5173 0.5205 13 7 6.6931 2.9499 1.4274 14 14 6.3393 5.2406 -0.0797 15 1 7.5484 5.7416 0.6220 16 1 6.5939 5.2089 -1.5423 17 1 5.1931 6.1411 0.2039 18 8 2.2756 -1.1000 -0.0120 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5137 22 1 4.7895 -2.4580 0.0002 23 1 6.9085 -1.2385 0.0099 24 1 6.9646 1.2049 0.0102 25 1 6.4410 2.0898 1.7981 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214024896.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = 12.941615 kcal Electronic energy + Delta-G solvation = -12402.349806 eV Core-core repulsion = 10153.436802 eV Total energy + Delta-G solvation = -2248.913005 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.88337 -36.79733 -33.96320 -33.57271 -30.66927 -29.28484 -27.13547 -24.97130 -21.72019 -21.03694 -20.38890 -18.04940 -16.72556 -15.68387 -15.62311 -14.41262 -14.23129 -13.57129 -12.84370 -12.73299 -12.70483 -12.23725 -11.95355 -11.36661 -11.01228 -10.80707 -10.54943 -10.46937 -10.09366 -9.99294 -9.36828 -9.07263 -7.68521 -7.63493 -7.23868 -4.63688 2.01275 2.65640 3.04542 3.13846 3.26030 3.61211 3.66047 3.81935 4.30208 4.90768 5.24016 5.63395 5.77219 5.90719 6.01809 6.15028 6.38544 6.50973 6.66759 7.08828 7.20668 7.26829 7.44766 7.64271 7.68537 7.85488 7.98112 8.34669 8.49393 8.97267 9.68631 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.039555 B = 0.011398 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.701311 B = 2455.878002 C = 3053.902820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C 0.122 3.878 3 N -0.439 5.439 4 C -0.082 4.082 5 C 0.063 3.937 6 C -0.274 4.274 7 C -0.028 4.028 8 C -0.268 4.268 9 C 0.145 3.855 10 C -0.454 4.454 11 H 0.090 0.910 12 C 0.032 3.968 13 N -0.762 5.762 14 Si 1.071 2.929 15 H -0.270 1.270 16 H -0.270 1.270 17 H -0.271 1.271 18 O -0.231 6.231 19 H 0.077 0.923 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.097 0.903 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 -0.969 -1.535 4.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.085 4.085 3 N -0.168 5.168 4 C -0.199 4.199 5 C 0.013 3.987 6 C -0.294 4.294 7 C -0.047 4.047 8 C -0.288 4.288 9 C 0.140 3.860 10 C -0.480 4.480 11 H 0.108 0.892 12 C -0.193 4.193 13 N -0.383 5.383 14 Si 0.893 3.107 15 H -0.194 1.194 16 H -0.195 1.195 17 H -0.196 1.196 18 O -0.124 6.124 19 H 0.095 0.905 20 H 0.094 0.906 21 H 0.108 0.892 22 H 0.115 0.885 23 H 0.123 0.877 24 H 0.133 0.867 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.758 0.838 -1.327 3.173 hybrid contribution -0.885 -2.196 -0.110 2.370 sum -3.643 -1.358 -1.437 4.145 Atomic orbital electron populations 1.19929 0.82909 1.03663 1.03169 1.25621 0.95623 0.78949 1.08324 1.69661 1.02455 1.29452 1.15227 1.20645 0.91062 0.90742 1.17453 1.20220 0.82666 0.94671 1.01149 1.18743 0.87510 0.97449 1.25740 1.20279 0.95034 0.94142 0.95226 1.20817 0.96820 0.93075 1.18134 1.17829 0.87076 0.92611 0.88469 1.20842 1.04454 0.91874 1.30786 0.89158 1.27433 0.91573 1.07090 0.93239 1.70431 1.34779 1.18033 1.15053 0.83544 0.77743 0.72007 0.77425 1.19400 1.19482 1.19575 1.84267 1.16149 1.36318 1.75678 0.90461 0.90634 0.89239 0.88454 0.87738 0.86659 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.58 10.51 36.01 0.38 -0.20 15 2 C 0.12 2.71 8.25 -12.94 -0.11 2.60 15 3 N -0.44 -11.35 11.28 -7.24 -0.08 -11.43 15 4 C -0.08 -2.26 7.21 -82.70 -0.60 -2.86 15 5 C 0.06 1.64 7.43 -38.69 -0.29 1.36 15 6 C -0.27 -6.56 10.02 -39.33 -0.39 -6.95 15 7 C -0.03 -0.65 9.95 -39.72 -0.40 -1.05 15 8 C -0.27 -6.81 7.96 -38.84 -0.31 -7.11 15 9 C 0.14 3.97 5.45 -104.75 -0.57 3.40 15 10 C -0.45 -12.08 9.02 -37.96 -0.34 -12.42 15 11 H 0.09 2.41 7.97 -52.49 -0.42 1.99 15 12 C 0.03 0.79 4.95 -17.31 -0.09 0.70 15 13 N -0.76 -19.24 12.33 55.55 0.68 -18.56 15 14 Si 1.07 20.43 30.00 -169.99 -5.10 15.33 15 15 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 16 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 17 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 18 O -0.23 -5.54 10.79 3.56 0.04 -5.50 15 19 H 0.08 0.99 8.14 -51.93 -0.42 0.56 15 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.10 2.08 8.06 -52.49 -0.42 1.65 15 23 H 0.10 2.04 8.06 -52.49 -0.42 1.62 15 24 H 0.12 2.89 6.51 -52.48 -0.34 2.55 15 25 H 0.31 7.99 6.69 -40.82 -0.27 7.72 15 LS Contribution 228.18 15.07 3.44 3.44 Total: -1.00 -29.92 228.18 -5.67 -35.59 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -1.94 Total: 3.66 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -2.71 Total: -22.54 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.60 Total: -29.99 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.04 Total: -5.50 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.10 Total: 15.33 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.92 -5.67 -35.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214024896.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.531 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds