Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30269 * 124.94774 * 2 1 4 4 C 1.34582 * 108.93505 * 180.02562 * 3 2 1 5 5 C 1.40185 * 106.89079 * 0.22801 * 4 3 2 6 6 C 1.38663 * 119.90561 * 180.36603 * 5 4 3 7 7 C 1.38483 * 121.00325 * 359.71290 * 6 5 4 8 8 C 1.37608 * 121.43156 * 0.02562 * 7 6 5 9 9 C 1.40817 * 120.05271 * 359.97438 * 8 7 6 10 10 C 1.40715 * 120.69895 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99834 * 154.83244 * 10 9 8 12 12 C 1.40065 * 120.00295 * 334.82197 * 10 9 8 13 13 N 1.30798 * 119.99755 * 334.26093 * 12 10 9 14 14 Si 1.86795 * 120.00082 * 154.25865 * 12 10 9 15 15 H 1.48500 * 109.47151 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47434 * 300.00505 * 14 12 10 17 17 H 1.48500 * 109.46901 * 60.00509 * 14 12 10 18 18 O 1.34192 * 124.94084 * 180.62696 * 2 1 3 19 19 H 1.08999 * 109.46775 * 90.00517 * 1 2 3 20 20 H 1.08999 * 109.47285 * 210.00421 * 1 2 3 21 21 H 1.08997 * 109.47028 * 330.00474 * 1 2 3 22 22 H 1.08001 * 119.49696 * 179.68765 * 6 5 4 23 23 H 1.07997 * 119.27568 * 179.97438 * 7 6 5 24 24 H 1.08005 * 119.97525 * 179.97438 * 8 7 6 25 25 H 0.96999 * 120.00143 * 354.40803 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2532 1.0678 0.0000 4 6 3.5468 0.6965 -0.0006 5 6 3.5683 -0.7051 -0.0063 6 6 4.7807 -1.3780 -0.0005 7 6 5.9804 -0.6863 0.0050 8 6 6.0156 0.6894 0.0054 9 6 4.8151 1.4255 -0.0003 10 6 4.8352 2.8325 -0.0005 11 1 3.9983 3.3844 -0.4023 12 6 5.9404 3.5173 0.5205 13 7 6.6931 2.9499 1.4274 14 14 6.3393 5.2406 -0.0797 15 1 7.5484 5.7416 0.6220 16 1 6.5939 5.2089 -1.5423 17 1 5.1931 6.1411 0.2039 18 8 2.2756 -1.1000 -0.0120 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5137 22 1 4.7895 -2.4580 0.0002 23 1 6.9085 -1.2385 0.0099 24 1 6.9646 1.2049 0.0102 25 1 6.4410 2.0898 1.7981 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214024896.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -7.521756 kcal Electronic energy + Delta-G solvation = -12403.237165 eV Core-core repulsion = 10153.436802 eV Total energy + Delta-G solvation = -2249.800363 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.76699 -38.70229 -35.82921 -35.45564 -32.22189 -31.20837 -28.87718 -26.86615 -23.63979 -22.86335 -22.22661 -19.93643 -18.59798 -17.54877 -17.51015 -16.23634 -15.82793 -15.38717 -14.66634 -14.35285 -14.07133 -13.88130 -13.43817 -13.09545 -12.73709 -12.63835 -12.39247 -11.99401 -11.93817 -11.79334 -11.18774 -10.95046 -9.62641 -9.58173 -9.14755 -6.61995 0.16109 0.71026 1.48282 1.56748 1.76637 1.80458 1.88300 2.23453 2.45799 3.24303 3.29231 4.11638 4.21928 4.40161 4.49881 4.66515 4.69439 4.82394 4.93187 5.16544 5.26931 5.40591 5.48296 5.72434 5.76647 5.93014 6.07140 6.41280 6.55539 7.07236 7.74231 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.039555 B = 0.011398 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.701311 B = 2455.878002 C = 3053.902820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C 0.150 3.850 3 N -0.486 5.486 4 C -0.119 4.119 5 C 0.035 3.965 6 C -0.268 4.268 7 C -0.027 4.027 8 C -0.279 4.279 9 C 0.114 3.886 10 C -0.491 4.491 11 H 0.075 0.925 12 C 0.005 3.995 13 N -0.777 5.777 14 Si 1.122 2.878 15 H -0.260 1.260 16 H -0.259 1.259 17 H -0.259 1.259 18 O -0.232 6.232 19 H 0.106 0.894 20 H 0.108 0.892 21 H 0.104 0.896 22 H 0.127 0.873 23 H 0.146 0.854 24 H 0.112 0.888 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 -1.599 -1.887 5.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.059 4.059 3 N -0.215 5.215 4 C -0.233 4.233 5 C -0.015 4.015 6 C -0.288 4.288 7 C -0.046 4.046 8 C -0.299 4.299 9 C 0.110 3.890 10 C -0.516 4.516 11 H 0.093 0.907 12 C -0.215 4.215 13 N -0.397 5.397 14 Si 0.937 3.063 15 H -0.184 1.184 16 H -0.183 1.183 17 H -0.183 1.183 18 O -0.126 6.126 19 H 0.125 0.875 20 H 0.126 0.874 21 H 0.123 0.877 22 H 0.145 0.855 23 H 0.163 0.837 24 H 0.130 0.870 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.524 0.188 -1.675 3.906 hybrid contribution -0.856 -2.200 -0.004 2.360 sum -4.380 -2.012 -1.678 5.104 Atomic orbital electron populations 1.20394 0.77564 1.06007 1.05743 1.27258 0.97999 0.77695 1.02971 1.69684 1.02351 1.31147 1.18273 1.21026 0.91899 0.91900 1.18505 1.20604 0.83953 0.94468 1.02493 1.19224 0.86960 0.99026 1.23545 1.20695 0.96644 0.93482 0.93738 1.20904 0.96076 0.94212 1.18757 1.18268 0.88054 0.93486 0.89187 1.20915 1.05463 0.92053 1.33195 0.90717 1.28835 0.90489 1.10086 0.92101 1.70541 1.35327 1.17660 1.16130 0.82957 0.78209 0.67605 0.77539 1.18385 1.18303 1.18286 1.84292 1.15602 1.36935 1.75754 0.87542 0.87369 0.87749 0.85465 0.83673 0.87025 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.04 10.51 71.24 0.75 -0.29 15 2 C 0.15 6.40 8.25 88.34 0.73 7.13 15 3 N -0.49 -25.31 11.28 -291.48 -3.29 -28.60 15 4 C -0.12 -6.66 7.21 41.29 0.30 -6.37 15 5 C 0.04 1.81 7.43 22.84 0.17 1.98 15 6 C -0.27 -12.42 10.02 22.43 0.22 -12.20 15 7 C -0.03 -1.24 9.95 22.18 0.22 -1.02 15 8 C -0.28 -14.42 7.96 22.75 0.18 -14.24 15 9 C 0.11 6.49 5.45 -19.95 -0.11 6.38 15 10 C -0.49 -27.21 9.02 23.32 0.21 -27.00 15 11 H 0.07 4.21 7.97 -2.91 -0.02 4.19 15 12 C 0.01 0.26 4.95 85.29 0.42 0.68 15 13 N -0.78 -40.17 12.33 21.85 0.27 -39.90 15 14 Si 1.12 41.26 30.00 68.60 2.06 43.32 15 15 H -0.26 -9.08 7.11 99.48 0.71 -8.38 15 16 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 17 H -0.26 -8.92 7.11 99.48 0.71 -8.21 15 18 O -0.23 -10.80 10.79 -10.18 -0.11 -10.91 15 19 H 0.11 2.26 8.14 -2.39 -0.02 2.24 15 20 H 0.11 2.16 8.14 -2.39 -0.02 2.14 15 21 H 0.10 2.47 8.14 -2.39 -0.02 2.45 15 22 H 0.13 5.06 8.06 -2.91 -0.02 5.03 15 23 H 0.15 5.28 8.06 -2.91 -0.02 5.25 15 24 H 0.11 5.73 6.51 -2.91 -0.02 5.71 15 25 H 0.29 15.78 6.69 -92.71 -0.62 15.16 15 Total: -1.00 -67.07 228.18 3.38 -63.69 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.35 Total: 17.33 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 3.09 Total: -44.93 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -3.02 Total: -68.50 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.11 Total: -10.91 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.06 Total: 43.32 kcal Total: -67.07 3.38 -63.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214024896.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.169 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds