Wall clock time and date at job start Mon Mar 30 2020 02:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39903 * 125.25323 * 2 1 4 4 C 1.32675 * 109.72296 * 179.97438 * 3 2 1 5 5 C 1.40775 * 126.37717 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00080 * 174.29718 * 5 4 3 7 7 C 1.39990 * 119.99363 * 354.29619 * 5 4 3 8 8 N 1.30831 * 120.00785 * 6.03403 * 7 5 4 9 9 Si 1.86801 * 119.99724 * 186.03117 * 7 5 4 10 10 H 1.48505 * 109.47216 * 94.97983 * 9 7 5 11 11 H 1.48502 * 109.47407 * 214.98048 * 9 7 5 12 12 H 1.48493 * 109.47294 * 334.98522 * 9 7 5 13 13 C 1.47171 * 107.25198 * 359.78378 * 4 3 2 14 14 C 1.39080 * 134.63589 * 179.50849 * 13 4 3 15 15 N 1.31742 * 120.22473 * 180.40951 * 14 13 4 16 16 C 1.32267 * 122.23848 * 0.24827 * 15 14 13 17 17 C 1.37748 * 121.40568 * 0.02788 * 16 15 14 18 18 C 1.36938 * 125.24789 * 179.97438 * 2 1 3 19 19 H 1.08994 * 109.47326 * 270.04461 * 1 2 3 20 20 H 1.09004 * 109.46894 * 30.04434 * 1 2 3 21 21 H 1.08997 * 109.47227 * 150.04140 * 1 2 3 22 22 H 0.96999 * 120.00712 * 180.02562 * 8 7 5 23 23 H 1.08007 * 119.88519 * 0.68255 * 14 13 4 24 24 H 1.08007 * 119.30059 * 179.97438 * 16 15 14 25 25 H 1.07999 * 120.59199 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2726 1.1425 0.0000 4 6 3.5509 0.7872 0.0006 5 6 4.6588 1.6557 0.0002 6 1 5.6579 1.2565 0.0937 7 6 4.4653 3.0368 -0.1213 8 7 3.2538 3.5308 -0.1157 9 14 5.9370 4.1747 -0.2913 10 1 6.1929 4.4416 -1.7296 11 1 5.6565 5.4547 0.4074 12 1 7.1317 3.5324 0.3130 13 6 3.5951 -0.6838 0.0063 14 6 4.6136 -1.6308 0.0008 15 7 4.3242 -2.9161 0.0007 16 6 3.0778 -3.3586 0.0008 17 6 2.0080 -2.4909 0.0004 18 6 2.2553 -1.1183 0.0005 19 1 -0.3633 0.0008 1.0276 20 1 -0.3633 0.8896 -0.5145 21 1 -0.3633 -0.8903 -0.5132 22 1 3.1198 4.4878 -0.2003 23 1 5.6454 -1.3115 0.0011 24 1 2.8948 -4.4231 0.0002 25 1 0.9955 -2.8666 0.0001 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214028012.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:44 Heat of formation + Delta-G solvation = 85.516142 kcal Electronic energy + Delta-G solvation = -12400.537917 eV Core-core repulsion = 10187.064731 eV Total energy + Delta-G solvation = -2213.473186 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.97532 -36.87210 -33.93638 -31.82515 -30.24070 -28.89817 -27.33697 -24.50622 -22.54322 -21.21532 -19.88168 -17.17635 -15.97263 -15.55909 -15.07761 -14.50189 -14.37695 -13.54651 -13.20738 -12.86351 -12.75433 -11.92445 -11.58135 -11.47803 -11.02719 -10.80090 -10.58856 -10.05795 -9.63424 -9.02831 -8.80965 -8.48211 -7.70888 -7.18726 -6.64159 -4.55863 1.85428 2.47143 3.02003 3.11119 3.15053 3.78987 3.97001 4.01407 4.71597 5.25102 5.39832 5.43229 5.47303 5.87030 5.90936 6.01638 6.06892 6.19671 6.48735 6.63369 6.92879 7.05430 7.27060 7.62811 8.12520 8.29483 8.61953 8.86487 8.91604 9.66486 10.31186 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.040831 B = 0.011623 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.583129 B = 2408.353923 C = 3076.640322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.427 5.427 3 N -0.321 5.321 4 C 0.230 3.770 5 C -0.424 4.424 6 H 0.090 0.910 7 C 0.069 3.931 8 N -0.755 5.755 9 Si 0.916 3.084 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.260 1.260 13 C -0.226 4.226 14 C 0.175 3.825 15 N -0.547 5.547 16 C 0.108 3.892 17 C -0.229 4.229 18 C 0.152 3.848 19 H 0.051 0.949 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.277 0.723 23 H 0.149 0.851 24 H 0.142 0.858 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 -4.371 -0.206 4.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.209 5.209 3 N -0.145 5.145 4 C 0.073 3.927 5 C -0.464 4.464 6 H 0.108 0.892 7 C -0.153 4.153 8 N -0.382 5.382 9 Si 0.741 3.259 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.184 1.184 13 C -0.238 4.238 14 C 0.014 3.986 15 N -0.260 5.260 16 C -0.044 4.044 17 C -0.256 4.256 18 C 0.025 3.975 19 H 0.069 0.931 20 H 0.095 0.905 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.166 0.834 24 H 0.159 0.841 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.262 -3.844 -0.211 4.465 hybrid contribution 0.130 0.474 -0.086 0.499 sum -2.132 -3.370 -0.297 3.998 Atomic orbital electron populations 1.21291 0.77234 1.02275 1.01105 1.48751 1.05102 1.02631 1.64396 1.78620 1.00482 0.98606 1.36763 1.20380 0.92452 0.86808 0.93046 1.18674 0.92214 0.90029 1.45478 0.89179 1.25931 0.96975 0.98962 0.93480 1.69922 1.21806 1.14066 1.32383 0.86160 0.81488 0.79192 0.79104 1.19536 1.20279 1.18386 1.21256 0.93153 0.96382 1.12961 1.22074 0.98401 0.86890 0.91223 1.67647 1.21820 1.16538 1.20016 1.22096 0.87714 0.98693 0.95945 1.20794 0.99937 0.90323 1.14505 1.19089 0.92159 0.89607 0.96638 0.93094 0.90469 0.91943 0.91222 0.83407 0.84092 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.24 11.39 59.85 0.68 2.92 15 2 N -0.43 -10.26 4.04 -65.43 -0.26 -10.53 15 3 N -0.32 -9.02 10.72 33.28 0.36 -8.66 15 4 C 0.23 6.36 6.92 -82.92 -0.57 5.78 15 5 C -0.42 -11.24 9.40 -37.97 -0.36 -11.60 15 6 H 0.09 2.19 7.85 -52.49 -0.41 1.77 15 7 C 0.07 1.76 5.49 -17.32 -0.10 1.66 15 8 N -0.76 -20.37 11.97 55.55 0.66 -19.70 15 9 Si 0.92 18.62 29.56 -169.99 -5.03 13.59 15 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 12 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 13 C -0.23 -5.61 6.35 -104.97 -0.67 -6.28 15 14 C 0.18 3.84 11.25 -17.28 -0.19 3.65 15 15 N -0.55 -11.35 10.34 -13.08 -0.14 -11.48 15 16 C 0.11 2.02 11.14 -17.54 -0.20 1.82 15 17 C -0.23 -4.44 10.10 -39.30 -0.40 -4.84 15 18 C 0.15 3.56 6.89 -84.14 -0.58 2.98 15 19 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 20 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15 23 H 0.15 2.90 8.06 -52.48 -0.42 2.47 15 24 H 0.14 2.06 8.06 -52.48 -0.42 1.63 15 25 H 0.11 1.85 8.06 -52.49 -0.42 1.42 15 LS Contribution 231.64 15.07 3.49 3.49 Total: -1.00 -31.13 231.64 -5.37 -36.50 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -2.08 Total: 0.70 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.38 Total: -3.91 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.62 Total: -50.37 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.13 -5.37 -36.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214028012.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.021 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds