Wall clock time and date at job start Mon Mar 30 2020 02:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35978 * 126.37131 * 2 1 4 4 N 1.30521 * 109.95737 * 179.97438 * 3 2 1 5 5 C 1.34118 * 109.64748 * 359.45204 * 4 3 2 6 6 C 1.37932 * 126.37285 * 179.17596 * 2 1 3 7 7 N 1.32187 * 133.98115 * 359.96048 * 6 2 1 8 8 C 1.31879 * 122.85787 * 180.02562 * 7 6 2 9 9 C 1.37629 * 122.37249 * 359.97438 * 8 7 6 10 10 C 1.41245 * 119.11568 * 0.02562 * 9 8 7 11 11 C 1.40759 * 121.47183 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99969 * 203.57595 * 11 10 9 13 13 C 1.40193 * 120.00031 * 23.57443 * 11 10 9 14 14 N 1.30684 * 119.99803 * 16.77813 * 13 11 10 15 15 Si 1.86798 * 120.00052 * 196.77558 * 13 11 10 16 16 H 1.48496 * 109.47269 * 265.19833 * 15 13 11 17 17 H 1.48501 * 109.47062 * 25.20378 * 15 13 11 18 18 H 1.48501 * 109.47079 * 145.19824 * 15 13 11 19 19 H 1.08994 * 109.47170 * 270.81688 * 1 2 3 20 20 H 1.08998 * 109.47271 * 30.82284 * 1 2 3 21 21 H 1.08999 * 109.46788 * 150.82311 * 1 2 3 22 22 H 1.08003 * 125.01865 * 359.38153 * 3 2 1 23 23 H 1.08001 * 118.81197 * 179.97438 * 8 7 6 24 24 H 1.08004 * 120.44198 * 180.02562 * 9 8 7 25 25 H 0.97009 * 120.00383 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2714 1.0949 0.0000 4 7 3.5234 0.7261 0.0005 5 6 3.5991 -0.6129 0.0130 6 6 2.2830 -1.1105 0.0160 7 7 2.0616 -2.4135 0.0354 8 6 3.0338 -3.3044 0.0485 9 6 4.3624 -2.9454 0.0425 10 6 4.7039 -1.5750 0.0221 11 6 6.0465 -1.1523 0.0157 12 1 6.3041 -0.1670 0.3751 13 6 7.0493 -2.0102 -0.4573 14 7 6.7315 -3.0486 -1.1843 15 14 8.8398 -1.6692 -0.0483 16 1 9.4628 -0.9007 -1.1558 17 1 8.9191 -0.8804 1.2074 18 1 9.5608 -2.9553 0.1286 19 1 -0.3633 0.0147 1.0275 20 1 -0.3634 0.8825 -0.5265 21 1 -0.3633 -0.8973 -0.5010 22 1 1.9268 2.1184 -0.0095 23 1 2.7782 -4.3536 0.0646 24 1 5.1336 -3.7015 0.0532 25 1 7.4253 -3.6421 -1.5120 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214028720.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:09 Heat of formation + Delta-G solvation = 56.426865 kcal Electronic energy + Delta-G solvation = -12418.098560 eV Core-core repulsion = 10203.363968 eV Total energy + Delta-G solvation = -2214.734592 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.51989 -38.49801 -36.11211 -34.74188 -32.03632 -30.12631 -27.83241 -27.49606 -23.99917 -23.06738 -21.32947 -19.26650 -18.06863 -17.80015 -16.85832 -16.53997 -15.97807 -15.09395 -14.64445 -14.21750 -14.08071 -13.50101 -13.36139 -13.19524 -12.87143 -12.82626 -12.19344 -11.93432 -11.50466 -11.26524 -10.76462 -9.60715 -9.24132 -9.07221 -8.77389 -6.53696 0.47833 1.04222 1.37411 1.50232 1.56155 1.90798 2.16050 2.28170 2.67776 3.65922 3.77525 3.91057 4.11105 4.47653 4.51941 4.71212 4.73245 4.85134 4.99655 5.25776 5.52548 5.63624 5.76779 6.13165 6.41794 6.55849 6.65767 6.72294 7.38543 7.69658 8.09702 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.053250 B = 0.010585 C = 0.009043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.694519 B = 2644.545878 C = 3095.674913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.491 5.491 3 C 0.197 3.803 4 N -0.511 5.511 5 C -0.124 4.124 6 C 0.234 3.766 7 N -0.610 5.610 8 C 0.143 3.857 9 C -0.291 4.291 10 C 0.142 3.858 11 C -0.439 4.439 12 H 0.078 0.922 13 C 0.036 3.964 14 N -0.786 5.786 15 Si 0.997 3.003 16 H -0.259 1.259 17 H -0.259 1.259 18 H -0.253 1.253 19 H 0.077 0.923 20 H 0.119 0.881 21 H 0.070 0.930 22 H 0.257 0.743 23 H 0.158 0.842 24 H 0.126 0.874 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 3.251 1.211 5.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.187 5.187 3 C -0.085 4.085 4 N -0.229 5.229 5 C -0.247 4.247 6 C 0.001 3.999 7 N -0.334 5.334 8 C -0.014 4.014 9 C -0.318 4.318 10 C 0.132 3.868 11 C -0.468 4.468 12 H 0.096 0.904 13 C -0.185 4.185 14 N -0.409 5.409 15 Si 0.815 3.185 16 H -0.183 1.183 17 H -0.183 1.183 18 H -0.176 1.176 19 H 0.096 0.904 20 H 0.138 0.862 21 H 0.089 0.911 22 H 0.272 0.728 23 H 0.175 0.825 24 H 0.144 0.856 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.428 3.342 1.052 5.646 hybrid contribution 0.734 -0.292 -0.014 0.790 sum -3.694 3.050 1.037 4.901 Atomic orbital electron populations 1.22056 0.74202 1.05140 1.03856 1.45006 1.08123 1.03871 1.61744 1.25821 0.84210 0.93945 1.04548 1.69458 1.20688 1.12333 1.20443 1.21024 0.94131 0.91130 1.18455 1.19197 0.89100 0.88918 1.02646 1.65950 1.37799 0.99014 1.30612 1.22087 0.88308 0.97363 0.93628 1.21749 0.96599 0.95404 1.18052 1.18549 0.91328 0.90414 0.86476 1.19879 0.91497 1.01496 1.33950 0.90393 1.27068 1.06929 0.93011 0.91473 1.69782 1.38971 1.11450 1.20657 0.84982 0.73835 0.79686 0.79993 1.18298 1.18292 1.17636 0.90418 0.86247 0.91111 0.72764 0.82463 0.85617 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.31 11.20 127.77 1.43 3.74 15 2 N -0.49 -19.55 3.20 -549.21 -1.76 -21.31 15 3 C 0.20 7.57 12.52 179.96 2.25 9.82 15 4 N -0.51 -25.91 11.22 -187.10 -2.10 -28.01 15 5 C -0.12 -7.02 7.26 41.55 0.30 -6.72 15 6 C 0.23 12.05 8.04 133.87 1.08 13.12 15 7 N -0.61 -31.36 10.30 -193.35 -1.99 -33.35 15 8 C 0.14 7.15 11.08 84.54 0.94 8.09 15 9 C -0.29 -15.91 8.81 22.87 0.20 -15.71 15 10 C 0.14 8.28 5.76 -19.77 -0.11 8.16 15 11 C -0.44 -24.69 9.15 23.36 0.21 -24.48 15 12 H 0.08 4.41 7.90 -2.91 -0.02 4.39 15 13 C 0.04 1.77 5.21 85.34 0.44 2.22 15 14 N -0.79 -39.47 10.92 21.87 0.24 -39.23 15 15 Si 1.00 36.92 29.59 68.60 2.03 38.95 15 16 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 18 H -0.25 -8.52 7.11 99.48 0.71 -7.82 15 19 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 20 H 0.12 2.04 8.14 -2.39 -0.02 2.02 15 21 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.26 6.18 8.06 -2.91 -0.02 6.16 15 23 H 0.16 6.56 8.06 -2.91 -0.02 6.54 15 24 H 0.13 6.79 6.21 -2.91 -0.02 6.77 15 25 H 0.30 13.19 8.29 -92.70 -0.77 12.42 15 Total: -1.00 -72.30 228.53 4.37 -67.94 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.21 Total: 16.77 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 6.74 Total: -1.75 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -5.61 Total: -121.90 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -72.30 4.37 -67.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214028720.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.364 kcal (2) G-P(sol) polarization free energy of solvation -72.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds