Wall clock time and date at job start Mon Mar 30 2020 02:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32619 * 125.18313 * 2 1 4 4 C 1.32844 * 109.73904 * 179.97438 * 3 2 1 5 5 C 1.41168 * 131.90463 * 180.02562 * 4 3 2 6 6 C 1.35533 * 119.87062 * 180.02562 * 5 4 3 7 7 C 1.46568 * 118.86514 * 359.97438 * 6 5 4 8 8 C 1.41340 * 120.52869 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00056 * 156.33631 * 8 7 6 10 10 C 1.39813 * 119.99901 * 336.05308 * 8 7 6 11 11 N 1.30918 * 120.00100 * 343.27677 * 10 8 7 12 12 Si 1.86800 * 119.99701 * 163.27156 * 10 8 7 13 13 H 1.48495 * 109.47645 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46955 * 120.00380 * 12 10 8 15 15 H 1.48497 * 109.47224 * 239.99991 * 12 10 8 16 16 C 1.39308 * 118.94174 * 0.25115 * 7 6 5 17 17 N 1.35477 * 120.16203 * 359.48996 * 16 7 6 18 18 N 1.31101 * 125.18666 * 179.97438 * 2 1 3 19 19 H 1.08997 * 109.46593 * 90.03039 * 1 2 3 20 20 H 1.09004 * 109.46797 * 210.02588 * 1 2 3 21 21 H 1.08991 * 109.46967 * 330.03200 * 1 2 3 22 22 H 1.07995 * 120.06348 * 359.97386 * 5 4 3 23 23 H 1.08007 * 120.56983 * 180.02562 * 6 5 4 24 24 H 0.96997 * 120.00004 * 180.02562 * 11 10 8 25 25 H 1.08002 * 119.92081 * 179.72375 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2712 1.0839 0.0000 4 6 3.5516 0.7301 0.0006 5 6 4.7402 1.4918 0.0013 6 6 5.9427 0.8664 0.0012 7 6 5.9781 -0.5988 0.0010 8 6 7.2126 -1.2871 0.0004 9 1 7.2673 -2.2983 0.3756 10 6 8.3619 -0.6609 -0.4915 11 7 8.2555 0.4080 -1.2399 12 14 10.0491 -1.3494 -0.0805 13 1 9.8974 -2.5541 0.7743 14 1 10.7520 -1.7188 -1.3354 15 1 10.8392 -0.3229 0.6456 16 6 4.7757 -1.3023 -0.0045 17 7 3.5967 -0.6350 0.0009 18 7 2.2625 -1.0715 0.0005 19 1 -0.3632 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5133 22 1 4.6915 2.5706 0.0010 23 1 6.8591 1.4380 0.0022 24 1 9.0528 0.8422 -1.5814 25 1 4.7834 -2.3823 -0.0093 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214028882.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:00 Heat of formation + Delta-G solvation = 94.412794 kcal Electronic energy + Delta-G solvation = -12236.747994 eV Core-core repulsion = 10023.660596 eV Total energy + Delta-G solvation = -2213.087398 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18744 -36.61982 -33.89904 -32.17257 -30.86944 -28.98757 -27.99467 -25.00353 -22.20567 -21.47496 -19.81627 -17.90480 -16.05846 -15.86104 -15.25212 -14.98815 -13.97734 -13.50077 -12.79434 -12.72327 -12.47274 -12.17479 -11.78485 -11.47209 -11.30822 -11.02886 -10.52884 -10.38807 -9.90296 -9.86357 -9.50234 -8.97139 -8.10434 -7.33538 -7.05966 -4.71944 2.11605 2.27490 2.86140 2.89987 2.95719 3.50595 3.68408 3.71379 4.25110 4.99708 5.05251 5.32663 5.84392 5.96007 5.97501 6.10603 6.24082 6.37482 6.69864 6.76553 7.07045 7.18686 7.39203 7.62203 7.66798 7.88212 8.16762 8.29886 8.48057 9.20792 9.77189 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.087045 B = 0.008308 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.593908 B = 3369.524066 C = 3618.414524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.205 3.795 3 N -0.571 5.571 4 C 0.215 3.785 5 C -0.128 4.128 6 C -0.050 4.050 7 C 0.091 3.909 8 C -0.435 4.435 9 H 0.091 0.909 10 C 0.074 3.926 11 N -0.788 5.788 12 Si 0.922 3.078 13 H -0.257 1.257 14 H -0.271 1.271 15 H -0.268 1.268 16 C -0.108 4.108 17 N -0.220 5.220 18 N -0.383 5.383 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.130 0.870 23 H 0.148 0.852 24 H 0.289 0.711 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 0.358 1.455 1.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.074 4.074 3 N -0.305 5.305 4 C -0.036 4.036 5 C -0.150 4.150 6 C -0.075 4.075 7 C 0.086 3.914 8 C -0.465 4.465 9 H 0.109 0.891 10 C -0.146 4.146 11 N -0.412 5.412 12 Si 0.745 3.255 13 H -0.180 1.180 14 H -0.196 1.196 15 H -0.193 1.193 16 C -0.239 4.239 17 N 0.011 4.989 18 N -0.222 5.222 19 H 0.091 0.909 20 H 0.091 0.909 21 H 0.095 0.905 22 H 0.148 0.852 23 H 0.165 0.835 24 H 0.100 0.900 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.739 0.172 1.312 1.516 hybrid contribution 1.081 -0.243 0.005 1.109 sum 0.343 -0.072 1.317 1.363 Atomic orbital electron populations 1.19879 0.85248 1.02806 1.02587 1.23839 0.97492 0.86584 0.99532 1.70480 0.98927 1.29639 1.31469 1.21317 0.93628 0.83017 1.05619 1.19923 0.88412 0.98950 1.07718 1.22761 0.96714 0.94803 0.93240 1.18404 0.91221 0.90948 0.90867 1.19423 0.90709 1.01381 1.34975 0.89054 1.26012 1.02270 0.94191 0.92084 1.69781 1.32862 1.16739 1.21846 0.86017 0.79752 0.80229 0.79490 1.18027 1.19605 1.19295 1.21343 0.80162 0.97083 1.25319 1.46773 1.05324 1.06545 1.40270 1.78134 0.84797 1.21741 1.37546 0.90911 0.90944 0.90487 0.85234 0.83475 0.89962 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.74 10.51 36.01 0.38 -0.36 15 2 C 0.20 4.66 8.09 -157.07 -1.27 3.39 15 3 N -0.57 -14.04 11.25 -10.04 -0.11 -14.15 15 4 C 0.21 5.41 7.85 -156.16 -1.23 4.19 15 5 C -0.13 -2.93 10.06 -39.44 -0.40 -3.33 15 6 C -0.05 -1.16 8.88 -37.19 -0.33 -1.49 15 7 C 0.09 2.23 5.70 -104.96 -0.60 1.64 15 8 C -0.44 -10.18 9.07 -37.81 -0.34 -10.52 15 9 H 0.09 2.03 7.90 -52.49 -0.41 1.62 15 10 C 0.07 1.62 5.21 -17.35 -0.09 1.53 15 11 N -0.79 -17.70 10.88 55.54 0.60 -17.10 15 12 Si 0.92 16.36 29.59 -169.99 -5.03 11.33 15 13 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 14 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 15 H -0.27 -4.68 7.11 56.52 0.40 -4.27 15 16 C -0.11 -2.68 11.03 -15.54 -0.17 -2.85 15 17 N -0.22 -5.67 3.85 -11.34 -0.04 -5.72 15 18 N -0.38 -9.53 12.77 32.38 0.41 -9.12 15 19 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.13 2.58 8.06 -52.49 -0.42 2.16 15 23 H 0.15 3.28 6.28 -52.48 -0.33 2.95 15 24 H 0.29 5.82 8.30 -40.82 -0.34 5.48 15 25 H 0.14 3.28 8.06 -52.49 -0.42 2.86 15 LS Contribution 229.08 15.07 3.45 3.45 Total: -1.00 -28.18 229.08 -6.76 -34.94 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -1.99 Total: 4.17 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -4.05 Total: -7.81 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.86 Total: -46.09 kcal Atomic # 14 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.33 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.18 -6.76 -34.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214028882.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.354 kcal (2) G-P(sol) polarization free energy of solvation -28.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds