Wall clock time and date at job start Mon Mar 30 2020 02:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32619 * 125.18313 * 2 1 4 4 C 1.32844 * 109.73904 * 179.97438 * 3 2 1 5 5 C 1.41168 * 131.90463 * 180.02562 * 4 3 2 6 6 C 1.35533 * 119.87062 * 180.02562 * 5 4 3 7 7 C 1.46568 * 118.86514 * 359.97438 * 6 5 4 8 8 C 1.41340 * 120.52869 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00056 * 156.33631 * 8 7 6 10 10 C 1.39813 * 119.99901 * 336.05308 * 8 7 6 11 11 N 1.30918 * 120.00100 * 343.27677 * 10 8 7 12 12 Si 1.86800 * 119.99701 * 163.27156 * 10 8 7 13 13 H 1.48495 * 109.47645 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46955 * 120.00380 * 12 10 8 15 15 H 1.48497 * 109.47224 * 239.99991 * 12 10 8 16 16 C 1.39308 * 118.94174 * 0.25115 * 7 6 5 17 17 N 1.35477 * 120.16203 * 359.48996 * 16 7 6 18 18 N 1.31101 * 125.18666 * 179.97438 * 2 1 3 19 19 H 1.08997 * 109.46593 * 90.03039 * 1 2 3 20 20 H 1.09004 * 109.46797 * 210.02588 * 1 2 3 21 21 H 1.08991 * 109.46967 * 330.03200 * 1 2 3 22 22 H 1.07995 * 120.06348 * 359.97386 * 5 4 3 23 23 H 1.08007 * 120.56983 * 180.02562 * 6 5 4 24 24 H 0.96997 * 120.00004 * 180.02562 * 11 10 8 25 25 H 1.08002 * 119.92081 * 179.72375 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2712 1.0839 0.0000 4 6 3.5516 0.7301 0.0006 5 6 4.7402 1.4918 0.0013 6 6 5.9427 0.8664 0.0012 7 6 5.9781 -0.5988 0.0010 8 6 7.2126 -1.2871 0.0004 9 1 7.2673 -2.2983 0.3756 10 6 8.3619 -0.6609 -0.4915 11 7 8.2555 0.4080 -1.2399 12 14 10.0491 -1.3494 -0.0805 13 1 9.8974 -2.5541 0.7743 14 1 10.7520 -1.7188 -1.3354 15 1 10.8392 -0.3229 0.6456 16 6 4.7757 -1.3023 -0.0045 17 7 3.5967 -0.6350 0.0009 18 7 2.2625 -1.0715 0.0005 19 1 -0.3632 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5133 22 1 4.6915 2.5706 0.0010 23 1 6.8591 1.4380 0.0022 24 1 9.0528 0.8422 -1.5814 25 1 4.7834 -2.3823 -0.0093 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214028882.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:00 Heat of formation + Delta-G solvation = 78.871551 kcal Electronic energy + Delta-G solvation = -12237.421913 eV Core-core repulsion = 10023.660596 eV Total energy + Delta-G solvation = -2213.761317 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.01036 -38.41196 -35.64982 -33.99986 -32.52857 -30.78443 -29.62363 -26.75480 -24.05059 -23.28850 -21.56450 -19.68667 -17.83990 -17.65442 -16.99181 -16.80561 -15.56720 -15.27362 -14.32873 -14.19072 -14.14346 -13.63555 -13.42204 -13.01180 -12.88019 -12.73854 -12.19023 -11.93536 -11.74842 -11.65476 -11.16801 -10.83174 -9.93977 -9.12577 -8.81583 -6.54854 0.30072 0.44903 1.41796 1.45455 1.59746 1.74840 1.95511 2.18947 2.48613 3.22970 3.34373 3.63113 4.18699 4.28269 4.55085 4.64340 4.76870 4.88978 5.00785 5.05093 5.27382 5.38959 5.62452 5.81350 5.91314 6.07154 6.34584 6.49045 6.66878 7.37348 8.10203 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.087045 B = 0.008308 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.593908 B = 3369.524066 C = 3618.414524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C 0.200 3.800 3 N -0.586 5.586 4 C 0.188 3.812 5 C -0.126 4.126 6 C -0.054 4.054 7 C 0.076 3.924 8 C -0.453 4.453 9 H 0.095 0.905 10 C 0.043 3.957 11 N -0.806 5.806 12 Si 0.996 3.004 13 H -0.257 1.257 14 H -0.266 1.266 15 H -0.258 1.258 16 C -0.140 4.140 17 N -0.232 5.232 18 N -0.412 5.412 19 H 0.093 0.907 20 H 0.090 0.910 21 H 0.096 0.904 22 H 0.157 0.843 23 H 0.156 0.844 24 H 0.303 0.697 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 0.651 1.500 1.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.079 4.079 3 N -0.321 5.321 4 C -0.063 4.063 5 C -0.148 4.148 6 C -0.079 4.079 7 C 0.070 3.930 8 C -0.481 4.481 9 H 0.113 0.887 10 C -0.176 4.176 11 N -0.430 5.430 12 Si 0.815 3.185 13 H -0.180 1.180 14 H -0.191 1.191 15 H -0.182 1.182 16 C -0.271 4.271 17 N -0.001 5.001 18 N -0.251 5.251 19 H 0.112 0.888 20 H 0.109 0.891 21 H 0.114 0.886 22 H 0.175 0.825 23 H 0.173 0.827 24 H 0.114 0.886 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.086 0.472 1.352 1.435 hybrid contribution 0.857 -0.309 -0.055 0.913 sum 0.943 0.163 1.298 1.612 Atomic orbital electron populations 1.20154 0.80852 1.04677 1.04511 1.25034 0.99918 0.85476 0.97447 1.70515 0.98878 1.30368 1.32335 1.21821 0.94657 0.83251 1.06526 1.20236 0.87636 1.00190 1.06697 1.22837 0.97136 0.94374 0.93534 1.18738 0.91550 0.91835 0.90879 1.19759 0.91230 1.01914 1.35176 0.88656 1.26859 1.05405 0.94205 0.91177 1.69779 1.34800 1.17120 1.21268 0.84923 0.74685 0.79574 0.79286 1.18037 1.19052 1.18219 1.21451 0.80474 0.97302 1.27889 1.46908 1.05717 1.06953 1.40543 1.78074 0.84827 1.23234 1.38953 0.88799 0.89087 0.88574 0.82549 0.82707 0.88598 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.29 10.51 71.24 0.75 -0.54 15 2 C 0.20 9.00 8.09 138.71 1.12 10.13 15 3 N -0.59 -28.67 11.25 -185.67 -2.09 -30.76 15 4 C 0.19 9.54 7.85 134.24 1.05 10.60 15 5 C -0.13 -5.76 10.06 22.36 0.23 -5.53 15 6 C -0.05 -2.49 8.88 23.82 0.21 -2.28 15 7 C 0.08 3.76 5.70 -20.08 -0.11 3.65 15 8 C -0.45 -21.08 9.07 23.41 0.21 -20.87 15 9 H 0.10 4.24 7.90 -2.91 -0.02 4.22 15 10 C 0.04 1.79 5.21 85.21 0.44 2.23 15 11 N -0.81 -35.08 10.88 21.81 0.24 -34.84 15 12 Si 1.00 31.84 29.59 68.60 2.03 33.87 15 13 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 14 H -0.27 -8.29 7.11 99.48 0.71 -7.58 15 15 H -0.26 -7.84 7.11 99.48 0.71 -7.13 15 16 C -0.14 -7.18 11.03 84.39 0.93 -6.25 15 17 N -0.23 -12.22 3.85 -189.78 -0.73 -12.95 15 18 N -0.41 -20.68 12.77 -51.48 -0.66 -21.34 15 19 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 20 H 0.09 2.39 8.14 -2.38 -0.02 2.37 15 21 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.16 6.07 8.06 -2.91 -0.02 6.05 15 23 H 0.16 6.82 6.28 -2.91 -0.02 6.81 15 24 H 0.30 11.58 8.30 -92.71 -0.77 10.81 15 25 H 0.14 6.87 8.06 -2.91 -0.02 6.85 15 Total: -1.00 -59.90 229.08 4.83 -55.07 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.20 Total: 19.83 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.83 Total: -8.86 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -3.24 Total: -99.90 kcal Atomic # 14 Polarization: 31.84 SS G_CDS: 2.03 Total: 33.87 kcal Total: -59.90 4.83 -55.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214028882.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.938 kcal (2) G-P(sol) polarization free energy of solvation -59.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds