Wall clock time and date at job start Mon Mar 30 2020 02:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32429 * 125.17500 * 2 1 4 4 C 1.32909 * 109.73079 * 179.97438 * 3 2 1 5 5 C 1.40537 * 132.68337 * 180.02562 * 4 3 2 6 6 C 1.38197 * 119.88485 * 180.02562 * 5 4 3 7 7 C 1.38725 * 119.84109 * 359.97438 * 6 5 4 8 8 C 1.40041 * 119.76087 * 0.02562 * 7 6 5 9 9 C 1.39539 * 120.01795 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00197 * 154.24533 * 9 8 7 11 11 C 1.40389 * 120.00069 * 334.24653 * 9 8 7 12 12 N 1.30618 * 119.99876 * 342.31803 * 11 9 8 13 13 Si 1.86805 * 120.00069 * 162.32370 * 11 9 8 14 14 H 1.48498 * 109.47145 * 90.00102 * 13 11 9 15 15 H 1.48504 * 109.46808 * 209.99650 * 13 11 9 16 16 H 1.48494 * 109.47120 * 329.99720 * 13 11 9 17 17 N 1.36680 * 107.31682 * 0.02562 * 4 3 2 18 18 N 1.31324 * 125.17284 * 180.02562 * 2 1 3 19 19 H 1.09001 * 109.47489 * 89.97125 * 1 2 3 20 20 H 1.09006 * 109.47090 * 209.97162 * 1 2 3 21 21 H 1.09001 * 109.47063 * 329.96744 * 1 2 3 22 22 H 1.07992 * 120.05620 * 0.02595 * 5 4 3 23 23 H 1.08006 * 120.08221 * 179.97438 * 6 5 4 24 24 H 1.08001 * 120.12346 * 180.27300 * 7 6 5 25 25 H 0.97003 * 120.00207 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2699 1.0825 0.0000 4 6 3.5510 0.7285 0.0006 5 6 4.7445 1.4706 0.0013 6 6 5.9619 0.8167 0.0012 7 6 6.0006 -0.5701 0.0010 8 6 4.8048 -1.2988 0.0003 9 6 4.8374 -2.6938 -0.0005 10 1 4.0078 -3.2537 0.4054 11 6 5.9487 -3.3697 -0.5288 12 7 6.7800 -2.7428 -1.3176 13 14 6.2386 -5.1655 -0.1039 14 1 5.5534 -6.0269 -1.1008 15 1 7.6960 -5.4496 -0.1228 16 1 5.6967 -5.4476 1.2496 17 7 3.5957 -0.6375 0.0003 18 7 2.2635 -1.0735 -0.0005 19 1 -0.3634 0.0005 -1.0276 20 1 -0.3633 -0.8903 0.5134 21 1 -0.3633 0.8897 0.5143 22 1 4.7102 2.5500 0.0019 23 1 6.8811 1.3838 0.0013 24 1 6.9495 -1.0858 0.0054 25 1 7.5476 -3.2098 -1.6830 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214029136.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:05 Heat of formation + Delta-G solvation = 74.262170 kcal Electronic energy + Delta-G solvation = -12446.427437 eV Core-core repulsion = 10232.466242 eV Total energy + Delta-G solvation = -2213.961195 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.92822 -38.50409 -35.86023 -33.93732 -32.48245 -30.77576 -29.03459 -27.71788 -23.64478 -23.48401 -21.54484 -19.33506 -18.43466 -17.53213 -16.76201 -16.56642 -15.99813 -15.11073 -14.27983 -14.24235 -13.85808 -13.75760 -13.35832 -13.20210 -12.89876 -12.48622 -12.26036 -12.07932 -11.70444 -11.66604 -11.12330 -10.74398 -9.98893 -9.10920 -8.95731 -6.78955 0.32535 0.59299 1.33051 1.39191 1.50129 1.73617 2.00752 2.10497 2.49544 3.19082 3.41722 3.77988 4.37440 4.51575 4.68280 4.73609 4.75845 4.86695 4.93425 5.10484 5.32697 5.54113 5.76152 5.82045 5.93838 6.06440 6.18758 6.37139 6.63067 7.45802 7.90124 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.038908 B = 0.011885 C = 0.009363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.475606 B = 2355.384501 C = 2989.767940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C 0.223 3.777 3 N -0.622 5.622 4 C 0.284 3.716 5 C -0.291 4.291 6 C -0.006 4.006 7 C -0.269 4.269 8 C 0.277 3.723 9 C -0.446 4.446 10 H 0.083 0.917 11 C 0.045 3.955 12 N -0.770 5.770 13 Si 1.004 2.996 14 H -0.260 1.260 15 H -0.245 1.245 16 H -0.259 1.259 17 N -0.339 5.339 18 N -0.406 5.406 19 H 0.095 0.905 20 H 0.090 0.910 21 H 0.097 0.903 22 H 0.141 0.859 23 H 0.159 0.841 24 H 0.148 0.852 25 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -1.660 1.183 2.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.058 4.058 3 N -0.358 5.358 4 C 0.039 3.961 5 C -0.317 4.317 6 C -0.029 4.029 7 C -0.293 4.293 8 C 0.172 3.828 9 C -0.476 4.476 10 H 0.101 0.899 11 C -0.179 4.179 12 N -0.391 5.391 13 Si 0.821 3.179 14 H -0.184 1.184 15 H -0.168 1.168 16 H -0.183 1.183 17 N -0.115 5.115 18 N -0.239 5.239 19 H 0.113 0.887 20 H 0.109 0.891 21 H 0.116 0.884 22 H 0.159 0.841 23 H 0.176 0.824 24 H 0.165 0.835 25 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.345 -2.027 1.017 2.294 hybrid contribution 0.289 -0.447 -0.020 0.533 sum 0.634 -2.474 0.996 2.742 Atomic orbital electron populations 1.20188 0.80884 1.04720 1.04590 1.25252 1.00024 0.85801 0.94740 1.70596 0.99032 1.30172 1.36036 1.22100 0.94733 0.83118 0.96185 1.19938 0.87542 0.99220 1.24979 1.21287 0.97274 0.93907 0.90473 1.21092 0.95740 0.93374 1.19065 1.18482 0.80345 0.93352 0.90633 1.19653 1.04644 0.90272 1.33047 0.89869 1.26978 0.92745 1.06800 0.91361 1.69690 1.10490 1.41668 1.17299 0.84872 0.79758 0.73188 0.80049 1.18423 1.16804 1.18291 1.48232 1.05353 1.07004 1.50932 1.78004 0.85407 1.23269 1.37246 0.88658 0.89090 0.88406 0.84105 0.82364 0.83464 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.46 10.51 71.24 0.75 -0.71 15 2 C 0.22 10.70 8.09 138.70 1.12 11.83 15 3 N -0.62 -32.34 11.25 -186.06 -2.09 -34.43 15 4 C 0.28 15.29 7.87 134.03 1.06 16.35 15 5 C -0.29 -13.58 10.15 22.82 0.23 -13.35 15 6 C -0.01 -0.25 10.07 22.38 0.23 -0.02 15 7 C -0.27 -13.08 8.66 22.82 0.20 -12.88 15 8 C 0.28 15.12 6.45 38.95 0.25 15.37 15 9 C -0.45 -23.26 9.08 23.11 0.21 -23.05 15 10 H 0.08 4.45 7.91 -2.91 -0.02 4.42 15 11 C 0.05 2.01 5.11 85.40 0.44 2.45 15 12 N -0.77 -34.50 10.99 21.90 0.24 -34.26 15 13 Si 1.00 33.34 29.60 68.60 2.03 35.37 15 14 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 15 H -0.24 -7.19 7.11 99.48 0.71 -6.48 15 16 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15 17 N -0.34 -19.12 3.95 -185.98 -0.74 -19.85 15 18 N -0.41 -22.09 12.63 -51.48 -0.65 -22.74 15 19 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 20 H 0.09 2.62 8.14 -2.38 -0.02 2.61 15 21 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 22 H 0.14 5.78 8.06 -2.91 -0.02 5.75 15 23 H 0.16 5.24 8.06 -2.91 -0.02 5.21 15 24 H 0.15 6.90 6.19 -2.91 -0.02 6.89 15 25 H 0.31 11.92 8.29 -92.71 -0.77 11.15 15 Total: -1.00 -65.27 228.67 4.48 -60.79 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.21 Total: 19.15 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 4.48 Total: -4.03 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -3.24 Total: -111.29 kcal Atomic # 14 Polarization: 33.34 SS G_CDS: 2.03 Total: 35.37 kcal Total: -65.27 4.48 -60.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029136.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.053 kcal (2) G-P(sol) polarization free energy of solvation -65.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds