Wall clock time and date at job start Mon Mar 30 2020 02:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30737 * 126.30248 * 2 1 4 4 N 1.28590 * 110.30903 * 180.02562 * 3 2 1 5 5 C 1.32321 * 109.64586 * 0.02562 * 4 3 2 6 6 C 1.41262 * 132.47361 * 180.02562 * 5 4 3 7 7 C 1.35433 * 119.83984 * 180.25139 * 6 5 4 8 8 C 1.46662 * 118.99043 * 359.53474 * 7 6 5 9 9 C 1.41274 * 120.46609 * 180.24722 * 8 7 6 10 10 H 1.07996 * 120.00412 * 330.53353 * 9 8 7 11 11 C 1.39725 * 120.00166 * 150.53152 * 9 8 7 12 12 N 1.30971 * 120.00260 * 161.67407 * 11 9 8 13 13 Si 1.86809 * 119.99811 * 341.67398 * 11 9 8 14 14 H 1.48499 * 109.46848 * 95.39851 * 13 11 9 15 15 H 1.48499 * 109.47161 * 215.39850 * 13 11 9 16 16 H 1.48497 * 109.47098 * 335.40153 * 13 11 9 17 17 C 1.39267 * 119.06492 * 0.46438 * 8 7 6 18 18 N 1.35787 * 120.09151 * 359.75732 * 17 8 7 19 19 H 1.09004 * 109.47664 * 269.97875 * 1 2 3 20 20 H 1.09000 * 109.47028 * 29.98172 * 1 2 3 21 21 H 1.09001 * 109.47249 * 149.97795 * 1 2 3 22 22 H 1.08002 * 120.07590 * 359.97438 * 6 5 4 23 23 H 1.07997 * 120.50058 * 179.72047 * 7 6 5 24 24 H 0.97001 * 119.99890 * 180.02562 * 12 11 9 25 25 H 1.07995 * 119.95469 * 179.79104 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2810 1.0536 0.0000 4 7 3.5171 0.6993 -0.0005 5 6 3.6014 -0.6212 -0.0015 6 6 4.7019 -1.5068 -0.0019 7 6 4.4905 -2.8445 -0.0081 8 6 3.1125 -3.3464 -0.0038 9 6 2.8561 -4.7356 -0.0048 10 1 3.5572 -5.4139 -0.4682 11 6 1.6954 -5.2323 0.5940 12 7 1.2686 -6.4345 0.2976 13 14 0.7525 -4.1816 1.8174 14 1 -0.3479 -3.4727 1.1161 15 1 0.1843 -5.0491 2.8803 16 1 1.6716 -3.1878 2.4281 17 6 2.0602 -2.4341 -0.0034 18 7 2.3154 -1.1004 -0.0019 19 1 -0.3634 -0.0004 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3634 -0.8898 -0.5142 22 1 5.7095 -1.1179 -0.0018 23 1 5.3241 -3.5312 -0.0130 24 1 0.4626 -6.7791 0.7130 25 1 1.0398 -2.7878 -0.0037 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214029305.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:29 Heat of formation + Delta-G solvation = 85.878188 kcal Electronic energy + Delta-G solvation = -12601.174513 eV Core-core repulsion = 10387.717027 eV Total energy + Delta-G solvation = -2213.457486 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.30755 -36.98591 -33.93409 -33.28529 -31.04809 -30.12285 -26.79182 -25.39400 -22.85624 -21.76830 -20.34096 -18.17680 -16.91298 -15.94677 -15.60124 -15.14303 -14.14964 -13.94767 -13.13536 -13.03108 -12.70217 -12.24346 -11.99629 -11.42868 -11.34378 -11.09349 -10.72147 -10.63471 -10.26937 -10.02204 -9.65573 -9.47408 -8.33995 -7.33960 -7.16707 -4.90190 1.74635 2.14282 2.82788 2.95097 3.06010 3.52652 3.53575 3.68118 4.04891 4.78212 4.99985 5.31907 5.51163 5.57405 5.80540 5.83807 5.95497 6.08763 6.18072 6.61940 6.65321 6.85905 7.07988 7.13421 7.33562 7.83301 7.88909 8.17767 8.36064 9.50882 9.66233 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.038276 B = 0.014465 C = 0.011249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.359278 B = 1935.200142 C = 2488.511811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.081 3.919 3 N -0.276 5.276 4 N -0.316 5.316 5 C 0.146 3.854 6 C -0.091 4.091 7 C -0.094 4.094 8 C 0.072 3.928 9 C -0.415 4.415 10 H 0.104 0.896 11 C 0.083 3.917 12 N -0.786 5.786 13 Si 0.910 3.090 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.246 1.246 17 C -0.183 4.183 18 N -0.318 5.318 19 H 0.070 0.930 20 H 0.085 0.915 21 H 0.069 0.931 22 H 0.138 0.862 23 H 0.134 0.866 24 H 0.292 0.708 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 1.836 1.187 2.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.179 4.179 3 N -0.122 5.122 4 N -0.167 5.167 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.118 4.118 8 C 0.067 3.933 9 C -0.443 4.443 10 H 0.122 0.878 11 C -0.139 4.139 12 N -0.409 5.409 13 Si 0.736 3.264 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.170 1.170 17 C -0.307 4.307 18 N 0.009 4.991 19 H 0.089 0.911 20 H 0.104 0.896 21 H 0.088 0.912 22 H 0.155 0.845 23 H 0.152 0.848 24 H 0.103 0.897 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.940 3.083 1.188 3.435 hybrid contribution -0.953 -1.201 0.539 1.625 sum -1.892 1.881 1.727 3.178 Atomic orbital electron populations 1.19928 0.84948 1.03366 1.02698 1.24329 0.96196 0.81907 1.15506 1.73824 0.96838 1.24121 1.17427 1.74563 1.11086 1.06997 1.24008 1.21880 0.85568 0.92144 1.10750 1.19881 0.95745 0.91568 1.03990 1.22519 0.97026 0.94051 0.98246 1.18410 0.89343 0.93302 0.92214 1.19310 1.04888 0.90441 1.29689 0.87805 1.26187 0.95866 0.95353 0.96541 1.69716 1.20098 1.16629 1.34413 0.86251 0.80104 0.79930 0.80149 1.19344 1.21034 1.16958 1.21234 0.99693 0.78716 1.31077 1.42842 1.07416 1.06949 1.41895 0.91110 0.89639 0.91224 0.84460 0.84784 0.89700 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.84 10.38 36.00 0.37 -0.47 15 2 C 0.08 1.79 8.14 -153.83 -1.25 0.54 15 3 N -0.28 -6.51 12.18 33.02 0.40 -6.11 15 4 N -0.32 -7.65 12.29 31.22 0.38 -7.26 15 5 C 0.15 3.41 7.89 -155.97 -1.23 2.18 15 6 C -0.09 -1.81 10.07 -39.43 -0.40 -2.21 15 7 C -0.09 -1.86 10.06 -37.18 -0.37 -2.23 15 8 C 0.07 1.65 5.25 -104.96 -0.55 1.10 15 9 C -0.42 -9.80 9.61 -37.87 -0.36 -10.16 15 10 H 0.10 2.49 8.06 -52.49 -0.42 2.06 15 11 C 0.08 1.93 5.40 -17.36 -0.09 1.83 15 12 N -0.79 -18.68 13.93 55.54 0.77 -17.91 15 13 Si 0.91 19.04 24.53 -169.99 -4.17 14.87 15 14 H -0.27 -5.41 6.72 56.52 0.38 -5.03 15 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 16 H -0.25 -5.49 6.86 56.52 0.39 -5.10 15 17 C -0.18 -4.25 8.11 -15.42 -0.13 -4.38 15 18 N -0.32 -7.46 2.93 -58.52 -0.17 -7.63 15 19 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 20 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.14 2.26 8.06 -52.49 -0.42 1.84 15 23 H 0.13 2.21 8.06 -52.49 -0.42 1.79 15 24 H 0.29 6.26 8.30 -40.82 -0.34 5.92 15 25 H 0.14 3.19 4.71 -52.49 -0.25 2.94 15 LS Contribution 223.07 15.07 3.36 3.36 Total: -1.00 -27.82 223.07 -5.39 -33.21 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -1.95 Total: 1.26 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -4.01 Total: -13.79 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 1.39 Total: -38.92 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.17 Total: 14.87 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -27.82 -5.39 -33.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029305.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.085 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds