Wall clock time and date at job start Mon Mar 30 2020 02:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30737 * 126.30248 * 2 1 4 4 N 1.28590 * 110.30903 * 180.02562 * 3 2 1 5 5 C 1.32321 * 109.64586 * 0.02562 * 4 3 2 6 6 C 1.41262 * 132.47361 * 180.02562 * 5 4 3 7 7 C 1.35433 * 119.83984 * 180.25139 * 6 5 4 8 8 C 1.46662 * 118.99043 * 359.53474 * 7 6 5 9 9 C 1.41274 * 120.46609 * 180.24722 * 8 7 6 10 10 H 1.07996 * 120.00412 * 330.53353 * 9 8 7 11 11 C 1.39725 * 120.00166 * 150.53152 * 9 8 7 12 12 N 1.30971 * 120.00260 * 161.67407 * 11 9 8 13 13 Si 1.86809 * 119.99811 * 341.67398 * 11 9 8 14 14 H 1.48499 * 109.46848 * 95.39851 * 13 11 9 15 15 H 1.48499 * 109.47161 * 215.39850 * 13 11 9 16 16 H 1.48497 * 109.47098 * 335.40153 * 13 11 9 17 17 C 1.39267 * 119.06492 * 0.46438 * 8 7 6 18 18 N 1.35787 * 120.09151 * 359.75732 * 17 8 7 19 19 H 1.09004 * 109.47664 * 269.97875 * 1 2 3 20 20 H 1.09000 * 109.47028 * 29.98172 * 1 2 3 21 21 H 1.09001 * 109.47249 * 149.97795 * 1 2 3 22 22 H 1.08002 * 120.07590 * 359.97438 * 6 5 4 23 23 H 1.07997 * 120.50058 * 179.72047 * 7 6 5 24 24 H 0.97001 * 119.99890 * 180.02562 * 12 11 9 25 25 H 1.07995 * 119.95469 * 179.79104 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2810 1.0536 0.0000 4 7 3.5171 0.6993 -0.0005 5 6 3.6014 -0.6212 -0.0015 6 6 4.7019 -1.5068 -0.0019 7 6 4.4905 -2.8445 -0.0081 8 6 3.1125 -3.3464 -0.0038 9 6 2.8561 -4.7356 -0.0048 10 1 3.5572 -5.4139 -0.4682 11 6 1.6954 -5.2323 0.5940 12 7 1.2686 -6.4345 0.2976 13 14 0.7525 -4.1816 1.8174 14 1 -0.3479 -3.4727 1.1161 15 1 0.1843 -5.0491 2.8803 16 1 1.6716 -3.1878 2.4281 17 6 2.0602 -2.4341 -0.0034 18 7 2.3154 -1.1004 -0.0019 19 1 -0.3634 -0.0004 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3634 -0.8898 -0.5142 22 1 5.7095 -1.1179 -0.0018 23 1 5.3241 -3.5312 -0.0130 24 1 0.4626 -6.7791 0.7130 25 1 1.0398 -2.7878 -0.0037 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214029305.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:29 Heat of formation + Delta-G solvation = 70.168002 kcal Electronic energy + Delta-G solvation = -12601.855758 eV Core-core repulsion = 10387.717027 eV Total energy + Delta-G solvation = -2214.138731 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.04087 -38.69521 -35.69610 -34.93718 -32.73453 -31.71085 -28.41111 -27.13301 -24.53404 -23.49804 -22.02713 -19.92274 -18.63067 -17.62147 -17.33375 -16.85987 -15.82062 -15.53503 -14.80759 -14.61678 -14.07183 -13.71842 -13.52773 -13.11036 -13.06565 -12.76181 -12.46260 -12.36768 -11.93722 -11.67766 -11.40006 -11.18306 -10.09335 -9.10145 -8.86492 -6.71160 0.09068 0.43408 1.16823 1.28803 1.38597 1.80236 1.85082 1.99451 2.32293 3.03661 3.40104 3.75611 3.92670 4.04983 4.14370 4.41343 4.57286 4.61748 4.83691 4.98208 5.07904 5.23961 5.37892 5.45203 5.63848 6.08953 6.11040 6.42326 6.60281 7.74580 7.95016 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.038276 B = 0.014465 C = 0.011249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.359278 B = 1935.200142 C = 2488.511811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.083 3.917 3 N -0.299 5.299 4 N -0.339 5.339 5 C 0.132 3.868 6 C -0.090 4.090 7 C -0.090 4.090 8 C 0.063 3.937 9 C -0.434 4.434 10 H 0.092 0.908 11 C 0.059 3.941 12 N -0.814 5.814 13 Si 0.951 3.049 14 H -0.256 1.256 15 H -0.270 1.270 16 H -0.268 1.268 17 C -0.194 4.194 18 N -0.334 5.334 19 H 0.089 0.911 20 H 0.110 0.890 21 H 0.077 0.923 22 H 0.174 0.826 23 H 0.169 0.831 24 H 0.302 0.698 25 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 2.129 1.505 2.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.179 4.179 3 N -0.144 5.144 4 N -0.189 5.189 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.114 4.114 8 C 0.058 3.942 9 C -0.462 4.462 10 H 0.110 0.890 11 C -0.161 4.161 12 N -0.437 5.437 13 Si 0.776 3.224 14 H -0.181 1.181 15 H -0.196 1.196 16 H -0.193 1.193 17 C -0.318 4.318 18 N -0.009 5.009 19 H 0.107 0.893 20 H 0.128 0.872 21 H 0.096 0.904 22 H 0.191 0.809 23 H 0.186 0.814 24 H 0.113 0.887 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.235 3.382 1.499 3.900 hybrid contribution -0.838 -1.244 0.414 1.556 sum -2.074 2.138 1.913 3.540 Atomic orbital electron populations 1.20202 0.81557 1.04988 1.04389 1.25332 0.98150 0.81178 1.13234 1.73769 0.96998 1.24967 1.18641 1.74490 1.11647 1.07662 1.25093 1.22514 0.86607 0.92363 1.10412 1.20320 0.96559 0.91153 1.03035 1.22827 0.96707 0.94646 0.97224 1.18648 0.90884 0.92951 0.91765 1.19351 1.05288 0.90797 1.30805 0.88976 1.26650 0.96270 0.95948 0.97228 1.69719 1.21073 1.17497 1.35444 0.85631 0.79206 0.78608 0.78985 1.18099 1.19604 1.19276 1.21311 0.99999 0.78853 1.31609 1.43063 1.07853 1.07224 1.42746 0.89272 0.87184 0.90423 0.80910 0.81404 0.88685 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.62 10.38 71.23 0.74 -0.88 15 2 C 0.08 3.53 8.14 137.57 1.12 4.65 15 3 N -0.30 -13.80 12.18 -49.44 -0.60 -14.41 15 4 N -0.34 -16.11 12.29 -55.15 -0.68 -16.79 15 5 C 0.13 5.96 7.89 134.21 1.06 7.02 15 6 C -0.09 -3.39 10.07 22.36 0.23 -3.16 15 7 C -0.09 -3.36 10.06 23.82 0.24 -3.12 15 8 C 0.06 2.78 5.25 -20.08 -0.11 2.67 15 9 C -0.43 -20.29 9.61 23.38 0.22 -20.07 15 10 H 0.09 4.42 8.06 -2.91 -0.02 4.40 15 11 C 0.06 2.70 5.40 85.18 0.46 3.16 15 12 N -0.81 -38.19 13.93 21.79 0.30 -37.89 15 13 Si 0.95 38.05 24.53 68.60 1.68 39.74 15 14 H -0.26 -9.65 6.72 99.48 0.67 -8.98 15 15 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 16 H -0.27 -11.64 6.86 99.48 0.68 -10.96 15 17 C -0.19 -8.80 8.11 84.33 0.68 -8.12 15 18 N -0.33 -15.30 2.93 -339.07 -0.99 -16.29 15 19 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 20 H 0.11 2.83 8.14 -2.39 -0.02 2.81 15 21 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.17 5.13 8.06 -2.91 -0.02 5.10 15 23 H 0.17 5.05 8.06 -2.91 -0.02 5.02 15 24 H 0.30 12.68 8.30 -92.71 -0.77 11.91 15 25 H 0.14 6.23 4.71 -2.91 -0.01 6.22 15 Total: -1.00 -58.18 223.07 5.50 -52.68 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.15 Total: 10.81 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 4.65 Total: -17.84 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.97 Total: -85.38 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.68 Total: 39.74 kcal Total: -58.18 5.50 -52.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029305.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.848 kcal (2) G-P(sol) polarization free energy of solvation -58.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds