Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30817 * 126.30097 * 2 1 4 4 N 1.28706 * 110.21784 * 179.97438 * 3 2 1 5 5 C 1.31532 * 109.56821 * 359.97438 * 4 3 2 6 6 C 1.46966 * 133.81952 * 180.02562 * 5 4 3 7 7 C 1.40387 * 120.97945 * 359.96537 * 6 5 4 8 8 H 1.07994 * 120.00331 * 23.66910 * 7 6 5 9 9 C 1.39964 * 119.99542 * 203.67543 * 7 6 5 10 10 N 1.30858 * 120.00306 * 17.63173 * 9 7 6 11 11 Si 1.86795 * 119.99772 * 197.63894 * 9 7 6 12 12 H 1.48501 * 109.47175 * 89.99509 * 11 9 7 13 13 H 1.48499 * 109.47289 * 209.99801 * 11 9 7 14 14 H 1.48501 * 109.47232 * 329.99729 * 11 9 7 15 15 C 1.40733 * 118.03848 * 180.02562 * 6 5 4 16 16 C 1.39117 * 119.18167 * 359.97438 * 15 6 5 17 17 C 1.35712 * 121.26612 * 359.97438 * 16 15 6 18 18 N 1.36264 * 121.82136 * 0.02562 * 17 16 15 19 19 H 1.09009 * 109.47184 * 90.02692 * 1 2 3 20 20 H 1.08999 * 109.47445 * 210.02687 * 1 2 3 21 21 H 1.08999 * 109.47506 * 330.02879 * 1 2 3 22 22 H 0.96999 * 120.00245 * 180.02562 * 10 9 7 23 23 H 1.07989 * 120.40528 * 179.97438 * 15 6 5 24 24 H 1.08002 * 119.36612 * 180.02562 * 16 15 6 25 25 H 1.07996 * 119.08705 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2815 1.0543 0.0000 4 7 3.5182 0.6977 0.0005 5 6 3.5981 -0.6152 0.0015 6 6 4.7184 -1.5664 0.0029 7 6 6.0483 -1.1166 0.0028 8 1 6.2853 -0.1318 0.3772 9 6 7.0669 -1.9446 -0.4828 10 7 6.7715 -2.9699 -1.2404 11 14 8.8481 -1.5863 -0.0490 12 1 9.2056 -2.2992 1.2037 13 1 9.7289 -2.0499 -1.1511 14 1 9.0260 -0.1248 0.1452 15 6 4.4187 -2.9414 0.0030 16 6 3.0875 -3.3455 0.0024 17 6 2.0766 -2.4401 0.0022 18 7 2.3138 -1.0983 0.0020 19 1 -0.3634 -0.0005 -1.0277 20 1 -0.3634 -0.8897 0.5142 21 1 -0.3634 0.8902 0.5134 22 1 7.4775 -3.5439 -1.5766 23 1 5.2123 -3.6738 0.0036 24 1 2.8541 -4.4000 0.0029 25 1 1.0558 -2.7929 0.0021 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214029468.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = 68.390748 kcal Electronic energy + Delta-G solvation = -12468.032604 eV Core-core repulsion = 10253.816805 eV Total energy + Delta-G solvation = -2214.215799 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.91774 -38.40230 -36.36015 -34.15068 -32.20341 -31.44381 -28.11854 -27.43662 -24.27949 -23.51059 -21.97816 -19.51763 -18.20899 -17.63670 -17.18930 -16.74459 -15.87753 -15.07666 -14.73772 -14.00704 -13.90332 -13.47000 -13.38490 -13.01684 -12.95006 -12.66158 -12.31531 -12.21911 -11.85247 -11.58770 -11.22535 -10.85065 -10.07514 -8.98654 -8.79841 -6.48796 0.33096 0.70961 1.36883 1.44490 1.52271 1.93485 2.00612 2.15479 2.43014 3.28038 3.51117 3.91596 4.02324 4.18881 4.59068 4.68169 4.71344 4.88319 4.96263 5.01855 5.24480 5.49984 5.63878 5.75981 5.97712 6.33111 6.44506 6.54480 6.67151 7.87869 8.01531 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.053316 B = 0.010692 C = 0.009131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.045059 B = 2618.107246 C = 3065.903636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C 0.095 3.905 3 N -0.318 5.318 4 N -0.346 5.346 5 C 0.137 3.863 6 C 0.111 3.889 7 C -0.425 4.425 8 H 0.080 0.920 9 C 0.036 3.964 10 N -0.778 5.778 11 Si 0.997 3.003 12 H -0.251 1.251 13 H -0.256 1.256 14 H -0.263 1.263 15 C -0.273 4.273 16 C -0.053 4.053 17 C -0.146 4.146 18 N -0.353 5.353 19 H 0.093 0.907 20 H 0.094 0.906 21 H 0.100 0.900 22 H 0.304 0.696 23 H 0.128 0.872 24 H 0.157 0.843 25 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 -4.175 1.356 5.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.168 4.168 3 N -0.162 5.162 4 N -0.193 5.193 5 C -0.117 4.117 6 C 0.105 3.895 7 C -0.453 4.453 8 H 0.099 0.901 9 C -0.185 4.185 10 N -0.400 5.400 11 Si 0.815 3.185 12 H -0.175 1.175 13 H -0.180 1.180 14 H -0.187 1.187 15 C -0.298 4.298 16 C -0.074 4.074 17 C -0.266 4.266 18 N -0.030 5.030 19 H 0.111 0.889 20 H 0.112 0.888 21 H 0.119 0.881 22 H 0.115 0.885 23 H 0.146 0.854 24 H 0.175 0.825 25 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.590 -2.835 1.190 4.727 hybrid contribution 0.391 -1.036 -0.046 1.108 sum -3.199 -3.871 1.144 5.151 Atomic orbital electron populations 1.20209 0.80061 1.05303 1.04643 1.25574 0.98461 0.81122 1.11617 1.73904 0.96827 1.25768 1.19655 1.74216 1.11777 1.08668 1.24660 1.24249 0.86897 0.91954 1.08555 1.18191 0.89325 0.90093 0.91920 1.19773 0.91210 1.02228 1.32058 0.90146 1.26949 1.06662 0.93229 0.91695 1.69822 1.38822 1.12022 1.19302 0.84967 0.73613 0.80096 0.79794 1.17525 1.17965 1.18664 1.21119 0.96155 0.93664 1.18880 1.20656 0.91655 0.99555 0.95492 1.21068 1.01528 0.78556 1.25457 1.43370 1.07118 1.08059 1.44437 0.88896 0.88761 0.88095 0.88455 0.85448 0.82534 0.80850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.20 10.41 71.24 0.74 -0.45 15 2 C 0.09 4.13 8.15 137.64 1.12 5.25 15 3 N -0.32 -16.29 12.19 -49.55 -0.60 -16.90 15 4 N -0.35 -19.80 12.27 -51.54 -0.63 -20.43 15 5 C 0.14 7.62 7.90 135.99 1.07 8.70 15 6 C 0.11 6.11 5.74 -19.86 -0.11 5.99 15 7 C -0.43 -22.85 9.09 23.21 0.21 -22.64 15 8 H 0.08 4.40 7.91 -2.91 -0.02 4.38 15 9 C 0.04 1.67 5.17 85.26 0.44 2.11 15 10 N -0.78 -36.80 10.93 21.83 0.24 -36.56 15 11 Si 1.00 35.40 29.59 68.60 2.03 37.43 15 12 H -0.25 -8.44 7.11 99.48 0.71 -7.74 15 13 H -0.26 -8.33 7.11 99.48 0.71 -7.62 15 14 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15 15 C -0.27 -13.50 8.81 23.09 0.20 -13.29 15 16 C -0.05 -2.19 9.90 21.90 0.22 -1.97 15 17 C -0.15 -5.88 10.86 83.42 0.91 -4.98 15 18 N -0.35 -16.77 2.95 -336.91 -0.99 -17.77 15 19 H 0.09 2.21 8.14 -2.38 -0.02 2.19 15 20 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 21 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 22 H 0.30 12.50 8.30 -92.71 -0.77 11.73 15 23 H 0.13 6.31 6.17 -2.92 -0.02 6.29 15 24 H 0.16 5.01 8.06 -2.91 -0.02 4.98 15 25 H 0.17 5.31 8.06 -2.91 -0.02 5.28 15 Total: -1.00 -66.41 228.22 6.05 -60.36 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.21 Total: 15.15 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.80 Total: -21.29 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -1.99 Total: -91.65 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -66.41 6.05 -60.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029468.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.754 kcal (2) G-P(sol) polarization free energy of solvation -66.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds