Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34907 * 125.68237 * 2 1 4 4 N 1.37259 * 107.03003 * 180.02562 * 3 2 1 5 5 C 1.35955 * 131.91745 * 180.02562 * 4 3 2 6 6 C 1.39669 * 118.71081 * 179.73190 * 5 4 3 7 7 C 1.41361 * 120.96813 * 180.23994 * 6 5 4 8 8 H 1.07998 * 120.00463 * 336.89424 * 7 6 5 9 9 C 1.39782 * 119.99649 * 156.89749 * 7 6 5 10 10 N 1.30946 * 119.99924 * 343.34949 * 9 7 6 11 11 Si 1.86800 * 119.99891 * 163.35383 * 9 7 6 12 12 H 1.48506 * 109.47452 * 59.99664 * 11 9 7 13 13 H 1.48499 * 109.47440 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46841 * 299.99960 * 11 9 7 15 15 C 1.46583 * 118.06150 * 0.48367 * 6 5 4 16 16 N 1.30774 * 119.41901 * 359.48192 * 15 6 5 17 17 C 1.34337 * 121.58666 * 0.27516 * 16 15 6 18 18 N 1.32618 * 130.90426 * 180.02562 * 17 16 15 19 19 H 1.08995 * 109.47098 * 90.00608 * 1 2 3 20 20 H 1.09006 * 109.47127 * 210.00369 * 1 2 3 21 21 H 1.09004 * 109.47103 * 330.00196 * 1 2 3 22 22 H 1.08005 * 126.48599 * 0.02562 * 3 2 1 23 23 H 1.07998 * 120.64444 * 359.95854 * 5 4 3 24 24 H 0.97007 * 119.99475 * 180.02562 * 10 9 7 25 25 H 1.07995 * 120.29102 * 179.75235 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0958 0.0000 4 7 3.5943 0.6568 -0.0006 5 6 4.7784 1.3248 -0.0004 6 6 5.9647 0.5876 0.0046 7 6 7.2223 1.2332 0.0101 8 1 7.3115 2.2452 -0.3564 9 6 8.3505 0.5617 0.4898 10 7 8.2095 -0.5137 1.2235 11 14 10.0591 1.1984 0.0843 12 1 10.2115 2.5782 0.6121 13 1 11.0774 0.3154 0.7077 14 1 10.2469 1.2084 -1.3888 15 6 5.8677 -0.8750 -0.0016 16 7 4.6886 -1.4405 -0.0011 17 6 3.5592 -0.7130 -0.0006 18 7 2.2864 -1.0853 0.0003 19 1 -0.3633 -0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9631 2.1240 0.0004 23 1 4.8013 2.4046 -0.0003 24 1 8.9925 -0.9795 1.5568 25 1 6.7621 -1.4802 -0.0021 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214029546.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = 79.326751 kcal Electronic energy + Delta-G solvation = -12272.989929 eV Core-core repulsion = 10059.248351 eV Total energy + Delta-G solvation = -2213.741578 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.45662 -36.91106 -34.10793 -33.17565 -30.79300 -29.34393 -26.61708 -25.18694 -22.56759 -21.65019 -19.59329 -18.06681 -16.62592 -15.91283 -15.38201 -14.97283 -14.34227 -13.32351 -13.11394 -12.73731 -12.46413 -12.08416 -11.84811 -11.58500 -11.46675 -11.29230 -10.86855 -10.63829 -10.27733 -9.54864 -9.27418 -8.51012 -7.80102 -7.30644 -6.97458 -4.79683 2.03294 2.37002 2.85605 2.88149 2.92087 3.59583 3.69774 3.93822 4.35460 4.81873 5.11676 5.61002 5.78151 5.86068 5.96976 6.10484 6.17618 6.38341 6.55564 6.71557 6.74196 7.13911 7.53545 7.61887 7.74736 7.86373 8.23725 8.34864 8.88267 9.23734 9.70515 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.088581 B = 0.008397 C = 0.007821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.019769 B = 3333.798559 C = 3579.368286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.032 3.968 3 C -0.138 4.138 4 N -0.331 5.331 5 C -0.148 4.148 6 C 0.048 3.952 7 C -0.428 4.428 8 H 0.092 0.908 9 C 0.073 3.927 10 N -0.788 5.788 11 Si 0.926 3.074 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.259 1.259 15 C 0.187 3.813 16 N -0.466 5.466 17 C 0.326 3.674 18 N -0.501 5.501 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.162 0.838 23 H 0.140 0.860 24 H 0.294 0.706 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 3.825 -1.394 4.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.106 4.106 3 C -0.274 4.274 4 N -0.001 5.001 5 C -0.278 4.278 6 C 0.041 3.959 7 C -0.458 4.458 8 H 0.110 0.890 9 C -0.148 4.148 10 N -0.412 5.412 11 Si 0.750 3.250 12 H -0.186 1.186 13 H -0.198 1.198 14 H -0.183 1.183 15 C -0.006 4.006 16 N -0.177 5.177 17 C -0.021 4.021 18 N -0.225 5.225 19 H 0.081 0.919 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.179 0.821 23 H 0.158 0.842 24 H 0.106 0.894 25 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.186 1.982 -1.243 2.623 hybrid contribution 1.243 2.122 -0.019 2.459 sum 0.057 4.104 -1.261 4.294 Atomic orbital electron populations 1.19927 0.88180 1.01940 1.01525 1.20440 0.95884 0.88484 1.05829 1.21910 0.81962 0.99740 1.23801 1.43105 1.05993 1.09691 1.41297 1.21672 0.81799 0.96923 1.27389 1.19235 0.92439 0.91967 0.92250 1.19337 0.90346 1.01249 1.34859 0.89039 1.26078 1.02640 0.94103 0.91939 1.69720 1.34294 1.15327 1.21858 0.86037 0.78907 0.79845 0.80259 1.18593 1.19808 1.18317 1.25178 0.93052 0.93202 0.89119 1.67544 0.96459 1.36819 1.16898 1.21492 0.92876 0.77530 1.10165 1.70294 0.97376 1.28831 1.26003 0.91927 0.91619 0.91805 0.82088 0.84214 0.89446 0.80128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.41 36.00 0.37 -0.53 15 2 C 0.03 0.69 7.06 -83.00 -0.59 0.11 15 3 C -0.14 -2.98 11.65 -16.30 -0.19 -3.17 15 4 N -0.33 -8.25 2.93 -63.27 -0.19 -8.43 15 5 C -0.15 -3.57 10.89 -15.19 -0.17 -3.74 15 6 C 0.05 1.18 5.71 -104.81 -0.60 0.58 15 7 C -0.43 -9.90 9.10 -37.82 -0.34 -10.25 15 8 H 0.09 1.98 7.90 -52.49 -0.41 1.57 15 9 C 0.07 1.57 5.23 -17.35 -0.09 1.48 15 10 N -0.79 -17.71 10.87 55.54 0.60 -17.10 15 11 Si 0.93 16.09 29.59 -169.99 -5.03 11.06 15 12 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 13 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 14 H -0.26 -4.48 7.11 56.52 0.40 -4.07 15 15 C 0.19 4.69 10.15 -14.64 -0.15 4.54 15 16 N -0.47 -12.46 10.43 -11.98 -0.12 -12.58 15 17 C 0.33 8.77 8.88 -322.21 -2.86 5.91 15 18 N -0.50 -12.90 11.31 -10.63 -0.12 -13.02 15 19 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.16 2.84 8.06 -52.48 -0.42 2.42 15 23 H 0.14 3.03 8.06 -52.49 -0.42 2.61 15 24 H 0.29 5.94 8.30 -40.82 -0.34 5.60 15 25 H 0.18 4.31 6.25 -52.49 -0.33 3.98 15 LS Contribution 228.52 15.07 3.44 3.44 Total: -1.00 -28.54 228.52 -8.01 -36.55 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -1.99 Total: 5.15 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.61 Total: -5.07 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.17 Total: -51.13 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.06 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.54 -8.01 -36.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029546.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.878 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds