Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34907 * 125.68237 * 2 1 4 4 N 1.37259 * 107.03003 * 180.02562 * 3 2 1 5 5 C 1.35955 * 131.91745 * 180.02562 * 4 3 2 6 6 C 1.39669 * 118.71081 * 179.73190 * 5 4 3 7 7 C 1.41361 * 120.96813 * 180.23994 * 6 5 4 8 8 H 1.07998 * 120.00463 * 336.89424 * 7 6 5 9 9 C 1.39782 * 119.99649 * 156.89749 * 7 6 5 10 10 N 1.30946 * 119.99924 * 343.34949 * 9 7 6 11 11 Si 1.86800 * 119.99891 * 163.35383 * 9 7 6 12 12 H 1.48506 * 109.47452 * 59.99664 * 11 9 7 13 13 H 1.48499 * 109.47440 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46841 * 299.99960 * 11 9 7 15 15 C 1.46583 * 118.06150 * 0.48367 * 6 5 4 16 16 N 1.30774 * 119.41901 * 359.48192 * 15 6 5 17 17 C 1.34337 * 121.58666 * 0.27516 * 16 15 6 18 18 N 1.32618 * 130.90426 * 180.02562 * 17 16 15 19 19 H 1.08995 * 109.47098 * 90.00608 * 1 2 3 20 20 H 1.09006 * 109.47127 * 210.00369 * 1 2 3 21 21 H 1.09004 * 109.47103 * 330.00196 * 1 2 3 22 22 H 1.08005 * 126.48599 * 0.02562 * 3 2 1 23 23 H 1.07998 * 120.64444 * 359.95854 * 5 4 3 24 24 H 0.97007 * 119.99475 * 180.02562 * 10 9 7 25 25 H 1.07995 * 120.29102 * 179.75235 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0958 0.0000 4 7 3.5943 0.6568 -0.0006 5 6 4.7784 1.3248 -0.0004 6 6 5.9647 0.5876 0.0046 7 6 7.2223 1.2332 0.0101 8 1 7.3115 2.2452 -0.3564 9 6 8.3505 0.5617 0.4898 10 7 8.2095 -0.5137 1.2235 11 14 10.0591 1.1984 0.0843 12 1 10.2115 2.5782 0.6121 13 1 11.0774 0.3154 0.7077 14 1 10.2469 1.2084 -1.3888 15 6 5.8677 -0.8750 -0.0016 16 7 4.6886 -1.4405 -0.0011 17 6 3.5592 -0.7130 -0.0006 18 7 2.2864 -1.0853 0.0003 19 1 -0.3633 -0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9631 2.1240 0.0004 23 1 4.8013 2.4046 -0.0003 24 1 8.9925 -0.9795 1.5568 25 1 6.7621 -1.4802 -0.0021 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214029546.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = 64.477129 kcal Electronic energy + Delta-G solvation = -12273.633857 eV Core-core repulsion = 10059.248351 eV Total energy + Delta-G solvation = -2214.385506 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.25568 -38.72385 -35.85354 -35.01341 -32.43067 -31.05970 -28.26945 -26.93981 -24.36190 -23.48847 -21.29856 -19.84234 -18.43780 -17.70323 -17.05339 -16.79512 -16.03353 -14.94294 -14.80019 -14.12606 -13.96687 -13.78437 -13.35896 -13.19210 -12.94890 -12.85660 -12.72771 -12.10750 -11.92832 -11.19623 -11.09592 -10.39396 -9.61854 -8.98841 -8.74529 -6.59220 0.17815 0.57149 1.43168 1.50877 1.58730 2.02312 2.10891 2.21796 2.58589 3.05860 3.25961 3.97701 4.03312 4.20285 4.47774 4.64282 4.84992 4.93504 4.99418 5.02790 5.14814 5.36964 5.76781 5.80515 6.04542 6.10006 6.46622 6.56571 7.04667 7.38394 8.06154 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.088581 B = 0.008397 C = 0.007821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.019769 B = 3333.798559 C = 3579.368286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.026 3.974 3 C -0.140 4.140 4 N -0.336 5.336 5 C -0.169 4.169 6 C 0.026 3.974 7 C -0.440 4.440 8 H 0.105 0.895 9 C 0.039 3.961 10 N -0.812 5.812 11 Si 1.002 2.998 12 H -0.256 1.256 13 H -0.266 1.266 14 H -0.255 1.255 15 C 0.175 3.825 16 N -0.490 5.490 17 C 0.278 3.722 18 N -0.532 5.532 19 H 0.082 0.918 20 H 0.066 0.934 21 H 0.097 0.903 22 H 0.203 0.797 23 H 0.161 0.839 24 H 0.305 0.695 25 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 5.455 -1.516 5.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 C -0.275 4.275 4 N -0.006 5.006 5 C -0.299 4.299 6 C 0.019 3.981 7 C -0.469 4.469 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.436 5.436 11 Si 0.821 3.179 12 H -0.180 1.180 13 H -0.190 1.190 14 H -0.179 1.179 15 C -0.017 4.017 16 N -0.202 5.202 17 C -0.067 4.067 18 N -0.258 5.258 19 H 0.100 0.900 20 H 0.085 0.915 21 H 0.116 0.884 22 H 0.220 0.780 23 H 0.179 0.821 24 H 0.117 0.883 25 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.914 3.607 -1.359 3.962 hybrid contribution 1.125 1.614 0.056 1.968 sum 0.211 5.221 -1.303 5.386 Atomic orbital electron populations 1.20120 0.83950 1.03711 1.03327 1.21484 0.98426 0.87392 1.03934 1.22753 0.80690 1.01772 1.22283 1.43285 1.07196 1.09222 1.40904 1.21983 0.81681 0.97780 1.28491 1.19545 0.93654 0.91913 0.92949 1.19721 0.90457 1.02028 1.34665 0.87752 1.27012 1.06189 0.93876 0.90935 1.69747 1.36131 1.15984 1.21701 0.84915 0.73606 0.79367 0.80019 1.17964 1.19010 1.17919 1.25276 0.92793 0.93881 0.89725 1.67445 0.97140 1.37928 1.17644 1.21706 0.93239 0.78748 1.13015 1.70280 0.97579 1.30927 1.27057 0.89966 0.91482 0.88409 0.77992 0.82136 0.88332 0.79858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.52 10.41 71.23 0.74 -0.77 15 2 C 0.03 1.08 7.06 41.52 0.29 1.37 15 3 C -0.14 -5.82 11.65 83.08 0.97 -4.85 15 4 N -0.34 -16.77 2.93 -354.08 -1.04 -17.81 15 5 C -0.17 -8.22 10.89 84.40 0.92 -7.30 15 6 C 0.03 1.30 5.71 -19.99 -0.11 1.19 15 7 C -0.44 -20.12 9.10 23.41 0.21 -19.91 15 8 H 0.10 4.38 7.90 -2.91 -0.02 4.36 15 9 C 0.04 1.62 5.23 85.20 0.45 2.07 15 10 N -0.81 -36.21 10.87 21.80 0.24 -35.97 15 11 Si 1.00 31.32 29.59 68.60 2.03 33.35 15 12 H -0.26 -7.76 7.11 99.48 0.71 -7.05 15 13 H -0.27 -7.95 7.11 99.48 0.71 -7.24 15 14 H -0.26 -7.82 7.11 99.48 0.71 -7.12 15 15 C 0.17 9.07 10.15 87.03 0.88 9.96 15 16 N -0.49 -27.21 10.43 -191.81 -2.00 -29.21 15 17 C 0.28 15.34 8.88 261.28 2.32 17.66 15 18 N -0.53 -27.73 11.31 -187.55 -2.12 -29.85 15 19 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.07 1.89 8.14 -2.38 -0.02 1.87 15 21 H 0.10 2.11 8.14 -2.38 -0.02 2.09 15 22 H 0.20 6.43 8.06 -2.91 -0.02 6.41 15 23 H 0.16 6.84 8.06 -2.91 -0.02 6.81 15 24 H 0.31 12.07 8.30 -92.70 -0.77 11.30 15 25 H 0.18 9.08 6.25 -2.91 -0.02 9.06 15 Total: -1.00 -62.55 228.52 4.98 -57.56 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 1.21 Total: 22.52 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.67 Total: -0.60 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -4.92 Total: -112.84 kcal Atomic # 14 Polarization: 31.32 SS G_CDS: 2.03 Total: 33.35 kcal Total: -62.55 4.98 -57.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029546.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.042 kcal (2) G-P(sol) polarization free energy of solvation -62.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds