Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39984 * 120.41643 * 2 1 4 4 N 1.31491 * 120.40500 * 179.97438 * 3 2 1 5 5 C 1.33699 * 121.05615 * 359.97438 * 4 3 2 6 6 N 1.33380 * 131.36116 * 179.97438 * 5 4 3 7 7 C 1.32153 * 110.09730 * 179.77510 * 6 5 4 8 8 C 1.40034 * 108.09883 * 0.38089 * 7 6 5 9 9 C 1.39835 * 126.93747 * 179.88982 * 8 7 6 10 10 H 1.07999 * 120.00109 * 179.68791 * 9 8 7 11 11 C 1.39906 * 119.99613 * 359.68711 * 9 8 7 12 12 N 1.31017 * 120.00568 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47055 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47415 * 119.99975 * 13 11 9 16 16 H 1.48500 * 109.47125 * 239.99767 * 13 11 9 17 17 N 1.37123 * 120.05194 * 359.97438 * 5 4 3 18 18 C 1.35881 * 120.41372 * 179.97438 * 2 1 3 19 19 H 1.09002 * 109.46605 * 270.02324 * 1 2 3 20 20 H 1.09000 * 109.46841 * 30.01593 * 1 2 3 21 21 H 1.08993 * 109.47350 * 150.02121 * 1 2 3 22 22 H 1.08003 * 119.80151 * 0.02562 * 3 2 1 23 23 H 1.08006 * 125.95517 * 180.23585 * 7 6 5 24 24 H 0.96996 * 120.00092 * 180.02562 * 12 11 9 25 25 H 1.08010 * 120.48196 * 0.04164 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2072 0.0000 4 7 3.5306 1.2069 0.0005 5 6 4.2201 0.0614 0.0015 6 7 5.5323 -0.1774 0.0018 7 6 5.7568 -1.4797 0.0078 8 6 4.5190 -2.1346 0.0030 9 6 4.2989 -3.5155 0.0045 10 1 3.2903 -3.9016 0.0054 11 6 5.3854 -4.3970 0.0050 12 7 6.6090 -3.9287 0.0035 13 14 5.0914 -6.2417 0.0064 14 1 3.6309 -6.5102 0.0075 15 1 5.7046 -6.8416 -1.2057 16 1 5.7051 -6.8398 1.2192 17 7 3.5573 -1.1390 0.0026 18 6 2.1948 -1.1718 0.0005 19 1 -0.3632 0.0004 1.0277 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3633 -0.8901 -0.5135 22 1 1.6792 2.1446 0.0004 23 1 6.7261 -1.9561 0.0130 24 1 7.3622 -4.5399 0.0034 25 1 1.6695 -2.1155 0.0003 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214029708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = 82.911905 kcal Electronic energy + Delta-G solvation = -12423.680387 eV Core-core repulsion = 10210.094273 eV Total energy + Delta-G solvation = -2213.586114 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17244 -37.10513 -34.02130 -33.20380 -31.70244 -28.75967 -26.07068 -25.41484 -22.89854 -21.12583 -20.34473 -17.86324 -16.50504 -16.09629 -15.12600 -14.81939 -14.38211 -13.27871 -13.06585 -12.99666 -12.38124 -12.29966 -11.69572 -11.57620 -11.46930 -11.04334 -11.01206 -10.56011 -10.34843 -9.59919 -9.13200 -8.46214 -7.70080 -7.18898 -6.99202 -4.41896 1.72644 2.22026 2.90335 2.92614 2.98150 3.65410 3.96297 3.97015 4.90229 4.97042 5.05629 5.27313 5.46037 5.56423 5.85118 5.87405 6.13398 6.48031 6.66559 6.72689 6.86634 7.17807 7.24509 7.68365 8.04106 8.14006 8.44075 8.55379 9.04711 9.51044 9.96067 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.045568 B = 0.010857 C = 0.008810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.318371 B = 2578.401158 C = 3177.575078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.205 4.205 3 C 0.080 3.920 4 N -0.414 5.414 5 C 0.237 3.763 6 N -0.451 5.451 7 C -0.043 4.043 8 C 0.160 3.840 9 C -0.425 4.425 10 H 0.080 0.920 11 C 0.070 3.930 12 N -0.794 5.794 13 Si 0.936 3.064 14 H -0.262 1.262 15 H -0.270 1.270 16 H -0.270 1.270 17 N -0.437 5.437 18 C 0.114 3.886 19 H 0.062 0.938 20 H 0.064 0.936 21 H 0.059 0.941 22 H 0.153 0.847 23 H 0.206 0.794 24 H 0.287 0.713 25 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -1.583 0.008 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.213 4.213 3 C -0.107 4.107 4 N -0.123 5.123 5 C -0.102 4.102 6 N -0.172 5.172 7 C -0.202 4.202 8 C 0.049 3.951 9 C -0.460 4.460 10 H 0.098 0.902 11 C -0.148 4.148 12 N -0.420 5.420 13 Si 0.760 3.240 14 H -0.185 1.185 15 H -0.195 1.195 16 H -0.195 1.195 17 N -0.123 5.123 18 C -0.016 4.016 19 H 0.080 0.920 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.170 0.830 23 H 0.222 0.778 24 H 0.098 0.902 25 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.618 -0.293 0.004 6.624 hybrid contribution -1.245 -2.201 0.006 2.529 sum -7.863 -2.494 0.010 8.249 Atomic orbital electron populations 1.20383 0.90107 1.02161 1.01576 1.19948 0.96965 0.93090 1.11276 1.22300 0.88560 0.96801 1.03063 1.67243 1.08450 1.25679 1.10968 1.20980 0.89201 0.80672 1.19343 1.69876 1.09977 1.19384 1.17923 1.24014 0.98826 0.86060 1.11288 1.19195 0.86275 0.88598 1.01048 1.18471 0.94836 0.87794 1.44854 0.90225 1.25783 0.94020 1.02390 0.92622 1.69552 0.99480 1.37608 1.35384 0.85796 0.79746 0.79621 0.78867 1.18527 1.19487 1.19491 1.43438 1.04707 1.10627 1.53532 1.21505 0.82647 0.99122 0.98373 0.91971 0.91657 0.92233 0.83021 0.77828 0.90155 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.03 36.00 0.36 -0.68 15 2 C -0.21 -3.69 5.87 -104.82 -0.61 -4.30 15 3 C 0.08 1.56 10.96 -17.04 -0.19 1.37 15 4 N -0.41 -10.16 10.47 -13.60 -0.14 -10.30 15 5 C 0.24 6.47 8.90 -321.93 -2.86 3.61 15 6 N -0.45 -12.98 11.23 -13.44 -0.15 -13.13 15 7 C -0.04 -1.22 10.84 -16.74 -0.18 -1.40 15 8 C 0.16 4.34 6.80 -83.62 -0.57 3.77 15 9 C -0.42 -10.69 9.27 -38.36 -0.36 -11.04 15 10 H 0.08 1.86 7.84 -52.49 -0.41 1.45 15 11 C 0.07 1.65 5.50 -17.28 -0.09 1.55 15 12 N -0.79 -19.21 10.32 55.55 0.57 -18.64 15 13 Si 0.94 17.40 29.56 -169.99 -5.03 12.37 15 14 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 15 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 16 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 17 N -0.44 -11.21 2.98 -61.70 -0.18 -11.39 15 18 C 0.11 2.37 10.62 -16.42 -0.17 2.20 15 19 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 20 H 0.06 0.69 8.10 -51.93 -0.42 0.27 15 21 H 0.06 0.67 8.09 -51.93 -0.42 0.25 15 22 H 0.15 2.31 8.06 -52.48 -0.42 1.89 15 23 H 0.21 5.63 5.73 -52.48 -0.30 5.33 15 24 H 0.29 6.20 8.30 -40.82 -0.34 5.86 15 25 H 0.15 2.65 8.06 -52.48 -0.42 2.23 15 LS Contribution 226.99 15.07 3.42 3.42 Total: -1.00 -30.35 226.99 -8.14 -38.49 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -1.96 Total: 4.11 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.68 Total: -4.92 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.10 Total: -53.47 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.35 -8.14 -38.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.403 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds