Wall clock time and date at job start Mon Mar 30 2020 02:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39984 * 120.41643 * 2 1 4 4 N 1.31491 * 120.40500 * 179.97438 * 3 2 1 5 5 C 1.33699 * 121.05615 * 359.97438 * 4 3 2 6 6 N 1.33380 * 131.36116 * 179.97438 * 5 4 3 7 7 C 1.32153 * 110.09730 * 179.77510 * 6 5 4 8 8 C 1.40034 * 108.09883 * 0.38089 * 7 6 5 9 9 C 1.39835 * 126.93747 * 179.88982 * 8 7 6 10 10 H 1.07999 * 120.00109 * 179.68791 * 9 8 7 11 11 C 1.39906 * 119.99613 * 359.68711 * 9 8 7 12 12 N 1.31017 * 120.00568 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47055 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47415 * 119.99975 * 13 11 9 16 16 H 1.48500 * 109.47125 * 239.99767 * 13 11 9 17 17 N 1.37123 * 120.05194 * 359.97438 * 5 4 3 18 18 C 1.35881 * 120.41372 * 179.97438 * 2 1 3 19 19 H 1.09002 * 109.46605 * 270.02324 * 1 2 3 20 20 H 1.09000 * 109.46841 * 30.01593 * 1 2 3 21 21 H 1.08993 * 109.47350 * 150.02121 * 1 2 3 22 22 H 1.08003 * 119.80151 * 0.02562 * 3 2 1 23 23 H 1.08006 * 125.95517 * 180.23585 * 7 6 5 24 24 H 0.96996 * 120.00092 * 180.02562 * 12 11 9 25 25 H 1.08010 * 120.48196 * 0.04164 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2072 0.0000 4 7 3.5306 1.2069 0.0005 5 6 4.2201 0.0614 0.0015 6 7 5.5323 -0.1774 0.0018 7 6 5.7568 -1.4797 0.0078 8 6 4.5190 -2.1346 0.0030 9 6 4.2989 -3.5155 0.0045 10 1 3.2903 -3.9016 0.0054 11 6 5.3854 -4.3970 0.0050 12 7 6.6090 -3.9287 0.0035 13 14 5.0914 -6.2417 0.0064 14 1 3.6309 -6.5102 0.0075 15 1 5.7046 -6.8416 -1.2057 16 1 5.7051 -6.8398 1.2192 17 7 3.5573 -1.1390 0.0026 18 6 2.1948 -1.1718 0.0005 19 1 -0.3632 0.0004 1.0277 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3633 -0.8901 -0.5135 22 1 1.6792 2.1446 0.0004 23 1 6.7261 -1.9561 0.0130 24 1 7.3622 -4.5399 0.0034 25 1 1.6695 -2.1155 0.0003 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214029708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:46 Heat of formation + Delta-G solvation = 65.156298 kcal Electronic energy + Delta-G solvation = -12424.450328 eV Core-core repulsion = 10210.094273 eV Total energy + Delta-G solvation = -2214.356055 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.01935 -38.84318 -35.80960 -34.99022 -33.27296 -30.62832 -27.52235 -27.16791 -24.64396 -22.86102 -22.24056 -19.66315 -18.31701 -17.82415 -16.80422 -16.66768 -15.95146 -14.84437 -14.80823 -14.17880 -14.13851 -13.57920 -13.16881 -13.15129 -13.02385 -12.77145 -12.70522 -12.08206 -12.01566 -11.30679 -10.93873 -10.34802 -9.43082 -9.11447 -8.73229 -6.33304 0.05260 0.52942 1.40198 1.44215 1.58223 2.03396 2.18750 2.26457 3.04507 3.15411 3.24426 3.77039 4.02018 4.21747 4.47793 4.76596 4.87313 4.98566 5.10662 5.20439 5.32044 5.38766 5.46617 5.89202 6.20375 6.31824 6.51645 6.68180 7.22580 7.58660 8.25393 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.045568 B = 0.010857 C = 0.008810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.318371 B = 2578.401158 C = 3177.575078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.191 4.191 3 C 0.121 3.879 4 N -0.463 5.463 5 C 0.223 3.777 6 N -0.497 5.497 7 C -0.097 4.097 8 C 0.136 3.864 9 C -0.451 4.451 10 H 0.093 0.907 11 C 0.027 3.973 12 N -0.825 5.825 13 Si 1.016 2.984 14 H -0.251 1.251 15 H -0.264 1.264 16 H -0.264 1.264 17 N -0.445 5.445 18 C 0.089 3.911 19 H 0.083 0.917 20 H 0.093 0.907 21 H 0.075 0.925 22 H 0.207 0.793 23 H 0.193 0.807 24 H 0.296 0.704 25 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.913 -1.939 -0.001 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.198 4.198 3 C -0.067 4.067 4 N -0.174 5.174 5 C -0.118 4.118 6 N -0.219 5.219 7 C -0.251 4.251 8 C 0.025 3.975 9 C -0.485 4.485 10 H 0.111 0.889 11 C -0.188 4.188 12 N -0.452 5.452 13 Si 0.835 3.165 14 H -0.174 1.174 15 H -0.188 1.188 16 H -0.188 1.188 17 N -0.130 5.130 18 C -0.040 4.040 19 H 0.102 0.898 20 H 0.112 0.888 21 H 0.094 0.906 22 H 0.224 0.776 23 H 0.209 0.791 24 H 0.107 0.893 25 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.303 -0.686 -0.004 10.326 hybrid contribution -0.401 -1.815 0.009 1.859 sum -10.705 -2.501 0.005 10.993 Atomic orbital electron populations 1.20549 0.85119 1.04493 1.03595 1.20683 1.00100 0.91243 1.07787 1.23564 0.87388 0.99813 0.95961 1.67410 1.10608 1.24577 1.14837 1.21319 0.89366 0.82108 1.18973 1.69709 1.11750 1.19907 1.20538 1.23812 0.99293 0.86374 1.15590 1.19488 0.86428 0.89614 1.01952 1.18850 0.96091 0.87393 1.46138 0.88914 1.26917 0.93254 1.07307 0.91352 1.69639 1.00625 1.39660 1.35253 0.84639 0.80082 0.72759 0.79042 1.17441 1.18830 1.18836 1.43598 1.06321 1.09716 1.53398 1.22357 0.81058 1.01857 0.98718 0.89845 0.88782 0.90605 0.77617 0.79102 0.89287 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.03 71.23 0.71 -0.75 15 2 C -0.19 -6.03 5.87 -19.99 -0.12 -6.15 15 3 C 0.12 4.23 10.96 85.17 0.93 5.17 15 4 N -0.46 -22.35 10.47 -196.93 -2.06 -24.41 15 5 C 0.22 12.50 8.90 261.18 2.32 14.82 15 6 N -0.50 -30.49 11.23 -196.44 -2.21 -32.69 15 7 C -0.10 -5.84 10.84 85.08 0.92 -4.92 15 8 C 0.14 7.73 6.80 38.92 0.26 7.99 15 9 C -0.45 -23.24 9.27 23.06 0.21 -23.03 15 10 H 0.09 4.32 7.84 -2.91 -0.02 4.30 15 11 C 0.03 1.28 5.50 85.22 0.47 1.75 15 12 N -0.83 -41.85 10.32 21.83 0.23 -41.62 15 13 Si 1.02 35.29 29.56 68.60 2.03 37.32 15 14 H -0.25 -8.22 7.11 99.48 0.71 -7.51 15 15 H -0.26 -8.82 7.11 99.48 0.71 -8.12 15 16 H -0.26 -8.83 7.11 99.48 0.71 -8.12 15 17 N -0.44 -23.16 2.98 -349.10 -1.04 -24.20 15 18 C 0.09 3.54 10.62 83.45 0.89 4.43 15 19 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.09 1.28 8.10 -2.39 -0.02 1.26 15 21 H 0.08 1.23 8.09 -2.39 -0.02 1.21 15 22 H 0.21 4.89 8.06 -2.91 -0.02 4.87 15 23 H 0.19 11.61 5.73 -2.91 -0.02 11.59 15 24 H 0.30 13.28 8.30 -92.71 -0.77 12.52 15 25 H 0.18 5.79 8.06 -2.91 -0.02 5.77 15 Total: -1.00 -72.01 226.99 4.76 -67.24 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 1.21 Total: 19.05 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 6.61 Total: -0.68 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -5.08 Total: -122.92 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -72.01 4.76 -67.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.400 kcal (2) G-P(sol) polarization free energy of solvation -72.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds