Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38350 * 125.55600 * 2 1 4 4 C 1.39828 * 125.69584 * 0.05325 * 3 2 1 5 5 H 1.07996 * 120.00183 * 343.21810 * 4 3 2 6 6 C 1.40342 * 119.99732 * 163.22209 * 4 3 2 7 7 N 1.30645 * 119.99960 * 350.30658 * 6 4 3 8 8 Si 1.86803 * 119.99615 * 170.30524 * 6 4 3 9 9 H 1.48497 * 109.47097 * 94.67346 * 8 6 4 10 10 H 1.48500 * 109.46702 * 214.67162 * 8 6 4 11 11 H 1.48497 * 109.47484 * 334.67346 * 8 6 4 12 12 C 1.39190 * 108.60836 * 180.02562 * 3 2 1 13 13 C 1.40838 * 107.42466 * 359.97438 * 12 3 2 14 14 N 1.33648 * 133.03946 * 179.97438 * 13 12 3 15 15 C 1.31724 * 119.73038 * 180.02562 * 14 13 12 16 16 C 1.38958 * 120.43713 * 359.97438 * 15 14 13 17 17 N 1.32070 * 120.64692 * 359.97438 * 16 15 14 18 18 C 1.32652 * 119.99018 * 0.03775 * 17 16 15 19 19 H 1.09001 * 109.47055 * 90.00393 * 1 2 3 20 20 H 1.08999 * 109.47266 * 210.00287 * 1 2 3 21 21 H 1.09000 * 109.47655 * 330.00360 * 1 2 3 22 22 H 0.97004 * 119.99371 * 180.02562 * 7 6 4 23 23 H 1.08001 * 126.28738 * 179.73290 * 12 3 2 24 24 H 1.08001 * 119.78280 * 180.02562 * 15 14 13 25 25 H 1.07999 * 119.67719 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2695 1.1255 0.0000 4 6 1.8201 2.4496 0.0011 5 1 0.7984 2.6733 -0.2681 6 6 2.6968 3.4879 0.3518 7 7 3.8690 3.2102 0.8574 8 14 2.1875 5.2668 0.0956 9 1 1.6059 5.8012 1.3531 10 1 3.3765 6.0726 -0.2814 11 1 1.1754 5.3408 -0.9885 12 6 3.6009 0.7198 -0.0006 13 6 3.6127 -0.6885 -0.0004 14 7 4.5970 -1.5925 -0.0011 15 6 4.3045 -2.8768 -0.0011 16 6 2.9800 -3.2971 0.0002 17 7 1.9946 -2.4177 0.0020 18 6 2.2650 -1.1190 0.0018 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 4.4747 3.9279 1.1002 23 1 4.4661 1.3662 -0.0048 24 1 5.0993 -3.6081 -0.0014 25 1 2.7541 -4.3532 0.0006 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214029888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = 49.561750 kcal Electronic energy + Delta-G solvation = -12463.648897 eV Core-core repulsion = 10248.616611 eV Total energy + Delta-G solvation = -2215.032285 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.22147 -39.11469 -35.74941 -34.79859 -32.54337 -30.82568 -28.20654 -26.98537 -24.23107 -23.28418 -21.36385 -19.21519 -18.15965 -17.86985 -16.70786 -16.46526 -16.30783 -15.11346 -14.55619 -14.46738 -14.29299 -13.67784 -13.32693 -12.95511 -12.85136 -12.47652 -12.20386 -12.16865 -12.09234 -11.90403 -11.14929 -9.54513 -9.29438 -8.81762 -8.72402 -6.52896 0.30914 0.59729 1.40708 1.44298 1.61030 1.97385 2.10619 2.24484 3.12457 3.34802 3.70494 3.77718 3.97792 4.26968 4.51368 4.55056 4.61816 4.69385 5.01365 5.32745 5.39099 5.58387 5.68675 5.95344 6.34894 6.50948 6.76090 6.78106 7.03722 7.39854 8.21707 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.055398 B = 0.010521 C = 0.008956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.315847 B = 2660.768212 C = 3125.605134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.503 5.503 3 C 0.276 3.724 4 C -0.456 4.456 5 H 0.105 0.895 6 C 0.035 3.965 7 N -0.799 5.799 8 Si 1.009 2.991 9 H -0.258 1.258 10 H -0.269 1.269 11 H -0.249 1.249 12 C -0.337 4.337 13 C 0.065 3.935 14 N -0.498 5.498 15 C 0.039 3.961 16 C -0.011 4.011 17 N -0.464 5.464 18 C 0.163 3.837 19 H 0.067 0.933 20 H 0.078 0.922 21 H 0.092 0.908 22 H 0.296 0.704 23 H 0.130 0.870 24 H 0.194 0.806 25 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -1.009 -0.921 4.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.197 5.197 3 C 0.168 3.832 4 C -0.489 4.489 5 H 0.123 0.877 6 C -0.185 4.185 7 N -0.423 5.423 8 Si 0.827 3.173 9 H -0.182 1.182 10 H -0.193 1.193 11 H -0.172 1.172 12 C -0.362 4.362 13 C -0.067 4.067 14 N -0.215 5.215 15 C -0.129 4.129 16 C -0.175 4.175 17 N -0.183 5.183 18 C -0.075 4.075 19 H 0.086 0.914 20 H 0.097 0.903 21 H 0.110 0.890 22 H 0.107 0.893 23 H 0.147 0.853 24 H 0.211 0.789 25 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.731 -0.922 -0.824 4.889 hybrid contribution 0.186 0.423 0.032 0.463 sum -4.544 -0.498 -0.792 4.640 Atomic orbital electron populations 1.21824 0.75995 1.04036 1.02795 1.44212 1.06328 1.02634 1.66547 1.18400 0.87717 0.86284 0.90826 1.19216 1.00315 0.88071 1.41265 0.87666 1.27040 0.93642 1.06758 0.91074 1.69866 1.08160 1.37764 1.26516 0.84783 0.79202 0.73162 0.80112 1.18226 1.19303 1.17193 1.20775 0.96701 0.89539 1.29140 1.20014 0.89484 0.95899 1.01262 1.68062 1.35392 1.02693 1.15322 1.23948 0.98064 0.92495 0.98428 1.23627 0.88906 0.99745 1.05202 1.66996 1.38327 0.99372 1.13576 1.19369 0.90413 0.88238 1.09465 0.91433 0.90319 0.88952 0.89294 0.85261 0.78897 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.47 10.84 127.77 1.39 4.85 15 2 N -0.50 -24.67 3.23 -535.75 -1.73 -26.40 15 3 C 0.28 14.80 6.54 38.73 0.25 15.05 15 4 C -0.46 -22.21 8.80 23.17 0.20 -22.01 15 5 H 0.11 4.55 7.42 -2.91 -0.02 4.52 15 6 C 0.03 1.61 5.42 85.38 0.46 2.08 15 7 N -0.80 -40.15 10.74 21.90 0.24 -39.92 15 8 Si 1.01 33.87 29.57 68.60 2.03 35.90 15 9 H -0.26 -8.24 7.11 99.48 0.71 -7.53 15 10 H -0.27 -8.81 7.11 99.48 0.71 -8.10 15 11 H -0.25 -7.91 7.11 99.48 0.71 -7.20 15 12 C -0.34 -19.56 9.66 23.14 0.22 -19.34 15 13 C 0.06 3.61 7.26 40.30 0.29 3.91 15 14 N -0.50 -25.37 10.56 -188.50 -1.99 -27.36 15 15 C 0.04 1.57 11.21 84.88 0.95 2.52 15 16 C -0.01 -0.43 11.21 84.83 0.95 0.52 15 17 N -0.46 -21.23 10.52 -191.51 -2.01 -23.24 15 18 C 0.16 8.43 7.90 134.06 1.06 9.49 15 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 20 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 21 H 0.09 3.06 7.50 -2.39 -0.02 3.04 15 22 H 0.30 13.25 8.29 -92.71 -0.77 12.48 15 23 H 0.13 7.91 6.32 -2.91 -0.02 7.89 15 24 H 0.19 5.56 8.06 -2.91 -0.02 5.54 15 25 H 0.20 5.32 8.06 -2.91 -0.02 5.29 15 Total: -1.00 -66.65 226.73 3.52 -63.13 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.21 Total: 20.80 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.78 Total: -2.92 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -5.50 Total: -116.92 kcal Atomic # 14 Polarization: 33.87 SS G_CDS: 2.03 Total: 35.90 kcal Total: -66.65 3.52 -63.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.694 kcal (2) G-P(sol) polarization free energy of solvation -66.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds