Wall clock time and date at job start Mon Mar 30 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35718 * 124.66410 * 2 1 4 4 C 1.38875 * 109.31155 * 180.02562 * 3 2 1 5 5 C 1.40954 * 126.93949 * 179.73047 * 4 3 2 6 6 H 1.07995 * 119.99931 * 180.02562 * 5 4 3 7 7 C 1.39776 * 119.99621 * 0.03502 * 5 4 3 8 8 N 1.31029 * 120.00286 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99636 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47141 * 59.99269 * 9 7 5 11 11 H 1.48498 * 109.46924 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47034 * 299.99735 * 9 7 5 13 13 C 1.47653 * 106.12381 * 359.75615 * 4 3 2 14 14 N 1.32584 * 133.80361 * 179.97438 * 13 4 3 15 15 C 1.32022 * 119.69695 * 179.97438 * 14 13 4 16 16 C 1.38650 * 120.25307 * 0.02562 * 15 14 13 17 17 N 1.31996 * 120.59936 * 0.02562 * 16 15 14 18 18 C 1.32734 * 119.94668 * 359.97438 * 17 16 15 19 19 H 1.09001 * 109.47274 * 270.46863 * 1 2 3 20 20 H 1.09006 * 109.46801 * 30.46330 * 1 2 3 21 21 H 1.08998 * 109.47507 * 150.46753 * 1 2 3 22 22 H 1.07994 * 125.34281 * 359.73784 * 3 2 1 23 23 H 0.96999 * 119.99562 * 180.02562 * 8 7 5 24 24 H 1.07998 * 119.87358 * 180.02562 * 15 14 13 25 25 H 1.07994 * 119.69832 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2369 1.1163 0.0000 4 6 3.5761 0.7486 -0.0006 5 6 4.6912 1.6107 -0.0061 6 1 5.6904 1.2010 -0.0064 7 6 4.5036 2.9958 -0.0110 8 7 3.2913 3.4928 -0.0110 9 14 5.9815 4.1384 -0.0175 10 1 6.7995 3.8827 -1.2303 11 1 5.5167 5.5488 -0.0227 12 1 6.8031 3.8919 1.1946 13 6 3.5959 -0.7278 0.0051 14 7 4.5651 -1.6326 0.0067 15 6 4.2606 -2.9172 0.0127 16 6 2.9341 -3.3206 0.0169 17 7 1.9607 -2.4292 0.0143 18 6 2.2488 -1.1335 0.0082 19 1 -0.3634 0.0084 1.0276 20 1 -0.3633 0.8859 -0.5211 21 1 -0.3634 -0.8941 -0.5065 22 1 1.8676 2.1311 -0.0040 23 1 3.1612 4.4541 -0.0147 24 1 5.0477 -3.6566 0.0145 25 1 2.6952 -4.3738 0.0222 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214029971.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:59 Heat of formation + Delta-G solvation = 77.082311 kcal Electronic energy + Delta-G solvation = -12439.999931 eV Core-core repulsion = 10226.161026 eV Total energy + Delta-G solvation = -2213.838904 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.48964 -37.34655 -34.06371 -32.89167 -30.83071 -28.43239 -26.99579 -24.35970 -23.02655 -21.61869 -19.46474 -17.35149 -16.26856 -15.89292 -15.18359 -14.74829 -14.49535 -13.60281 -13.05622 -12.94667 -12.62991 -11.79764 -11.43981 -11.30568 -11.16293 -10.74042 -10.52885 -10.43884 -10.26582 -9.90951 -9.26796 -7.88808 -7.42473 -7.05322 -6.63048 -4.14171 1.99421 2.18160 3.08806 3.13000 3.18149 3.69428 4.01973 4.03567 4.79349 5.12596 5.30499 5.46008 5.53874 5.75880 5.82839 5.94447 6.00960 6.19179 6.68459 6.90969 7.13494 7.50185 7.69995 8.11651 8.19863 8.41885 8.75249 8.94562 8.98930 9.08202 10.33578 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.041603 B = 0.011643 C = 0.009142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.867514 B = 2404.266567 C = 3061.989349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.451 5.451 3 C -0.080 4.080 4 C 0.040 3.960 5 C -0.401 4.401 6 H 0.081 0.919 7 C 0.055 3.945 8 N -0.828 5.828 9 Si 0.925 3.075 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.031 3.969 14 N -0.398 5.398 15 C -0.025 4.025 16 C 0.057 3.943 17 N -0.478 5.478 18 C 0.213 3.787 19 H 0.055 0.945 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.204 0.796 23 H 0.278 0.722 24 H 0.150 0.850 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 -3.613 -0.069 4.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.137 5.137 3 C -0.205 4.205 4 C 0.034 3.966 5 C -0.434 4.434 6 H 0.099 0.901 7 C -0.157 4.157 8 N -0.458 5.458 9 Si 0.750 3.250 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.192 1.192 13 C -0.113 4.113 14 N -0.111 5.111 15 C -0.193 4.193 16 C -0.111 4.111 17 N -0.198 5.198 18 C -0.026 4.026 19 H 0.074 0.926 20 H 0.094 0.906 21 H 0.089 0.911 22 H 0.220 0.780 23 H 0.089 0.911 24 H 0.167 0.833 25 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.126 -3.152 -0.077 4.439 hybrid contribution 0.473 0.323 0.021 0.573 sum -2.653 -2.829 -0.056 3.879 Atomic orbital electron populations 1.21703 0.79039 1.02860 1.01739 1.43341 1.04991 1.03612 1.61751 1.23518 0.89099 0.89466 1.18408 1.17955 0.92858 0.85260 1.00495 1.18858 0.93426 0.89712 1.41387 0.90114 1.25750 0.97168 0.98805 0.93932 1.69372 1.21847 1.14073 1.40483 0.86077 0.81091 0.78089 0.79729 1.19208 1.20564 1.19206 1.21069 0.88084 0.95968 1.06141 1.67544 1.36181 1.00886 1.06524 1.23025 0.96091 0.93069 1.07124 1.22964 0.89796 0.98166 1.00182 1.67035 1.37312 0.99769 1.15688 1.19180 0.90772 0.87255 1.05424 0.92597 0.90592 0.91121 0.77985 0.91108 0.83282 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 11.04 59.84 0.66 2.22 15 2 N -0.45 -10.44 3.14 -122.55 -0.39 -10.82 15 3 C -0.08 -2.04 10.32 -15.60 -0.16 -2.20 15 4 C 0.04 1.12 6.11 -104.79 -0.64 0.48 15 5 C -0.40 -11.02 9.43 -37.98 -0.36 -11.38 15 6 H 0.08 2.20 7.84 -52.49 -0.41 1.79 15 7 C 0.05 1.38 5.49 -17.32 -0.10 1.28 15 8 N -0.83 -20.85 10.33 55.54 0.57 -20.28 15 9 Si 0.92 19.30 29.56 -169.99 -5.02 14.27 15 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 11 H -0.28 -5.65 7.11 56.52 0.40 -5.24 15 12 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 13 C 0.03 0.81 7.48 -82.77 -0.62 0.20 15 14 N -0.40 -9.83 10.53 -9.51 -0.10 -9.93 15 15 C -0.02 -0.50 11.22 -17.32 -0.19 -0.69 15 16 C 0.06 1.09 11.20 -17.33 -0.19 0.90 15 17 N -0.48 -10.60 10.52 -12.10 -0.13 -10.73 15 18 C 0.21 5.24 7.85 -155.29 -1.22 4.02 15 19 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 20 H 0.08 1.16 8.13 -51.93 -0.42 0.74 15 21 H 0.07 1.15 8.13 -51.93 -0.42 0.73 15 22 H 0.20 5.14 5.68 -52.49 -0.30 4.85 15 23 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 24 H 0.15 2.32 8.06 -52.49 -0.42 1.90 15 25 H 0.15 2.15 8.06 -52.49 -0.42 1.72 15 LS Contribution 227.87 15.07 3.43 3.43 Total: -1.00 -30.12 227.87 -6.41 -36.52 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -1.96 Total: 2.71 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.82 Total: -5.18 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.04 Total: -51.76 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.12 -6.41 -36.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029971.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.604 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds