Wall clock time and date at job start Mon Mar 30 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35718 * 124.66410 * 2 1 4 4 C 1.38875 * 109.31155 * 180.02562 * 3 2 1 5 5 C 1.40954 * 126.93949 * 179.73047 * 4 3 2 6 6 H 1.07995 * 119.99931 * 180.02562 * 5 4 3 7 7 C 1.39776 * 119.99621 * 0.03502 * 5 4 3 8 8 N 1.31029 * 120.00286 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99636 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47141 * 59.99269 * 9 7 5 11 11 H 1.48498 * 109.46924 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47034 * 299.99735 * 9 7 5 13 13 C 1.47653 * 106.12381 * 359.75615 * 4 3 2 14 14 N 1.32584 * 133.80361 * 179.97438 * 13 4 3 15 15 C 1.32022 * 119.69695 * 179.97438 * 14 13 4 16 16 C 1.38650 * 120.25307 * 0.02562 * 15 14 13 17 17 N 1.31996 * 120.59936 * 0.02562 * 16 15 14 18 18 C 1.32734 * 119.94668 * 359.97438 * 17 16 15 19 19 H 1.09001 * 109.47274 * 270.46863 * 1 2 3 20 20 H 1.09006 * 109.46801 * 30.46330 * 1 2 3 21 21 H 1.08998 * 109.47507 * 150.46753 * 1 2 3 22 22 H 1.07994 * 125.34281 * 359.73784 * 3 2 1 23 23 H 0.96999 * 119.99562 * 180.02562 * 8 7 5 24 24 H 1.07998 * 119.87358 * 180.02562 * 15 14 13 25 25 H 1.07994 * 119.69832 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2369 1.1163 0.0000 4 6 3.5761 0.7486 -0.0006 5 6 4.6912 1.6107 -0.0061 6 1 5.6904 1.2010 -0.0064 7 6 4.5036 2.9958 -0.0110 8 7 3.2913 3.4928 -0.0110 9 14 5.9815 4.1384 -0.0175 10 1 6.7995 3.8827 -1.2303 11 1 5.5167 5.5488 -0.0227 12 1 6.8031 3.8919 1.1946 13 6 3.5959 -0.7278 0.0051 14 7 4.5651 -1.6326 0.0067 15 6 4.2606 -2.9172 0.0127 16 6 2.9341 -3.3206 0.0169 17 7 1.9607 -2.4292 0.0143 18 6 2.2488 -1.1335 0.0082 19 1 -0.3634 0.0084 1.0276 20 1 -0.3633 0.8859 -0.5211 21 1 -0.3634 -0.8941 -0.5065 22 1 1.8676 2.1311 -0.0040 23 1 3.1612 4.4541 -0.0147 24 1 5.0477 -3.6566 0.0145 25 1 2.6952 -4.3738 0.0222 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214029971.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:59 Heat of formation + Delta-G solvation = 57.529619 kcal Electronic energy + Delta-G solvation = -12440.847799 eV Core-core repulsion = 10226.161026 eV Total energy + Delta-G solvation = -2214.686773 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.23225 -39.07261 -35.90146 -34.67379 -32.53262 -30.19644 -28.70909 -26.12421 -24.78259 -23.31498 -21.30988 -19.16721 -18.07035 -17.63387 -16.90755 -16.44240 -16.14648 -15.26881 -14.60731 -14.56691 -14.33119 -13.44419 -13.14783 -13.04394 -12.90643 -12.36467 -12.27233 -12.20851 -12.00408 -11.81797 -11.10245 -9.60928 -9.15821 -8.94696 -8.50041 -6.11460 0.27178 0.48651 1.41619 1.42798 1.54497 2.03112 2.15927 2.30096 3.03404 3.51798 3.61218 3.64198 3.98971 4.20350 4.48616 4.51344 4.56213 4.67424 4.95765 5.19166 5.24305 5.63708 5.89913 6.24424 6.37418 6.63873 6.85613 7.01184 7.11636 7.33596 8.47961 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.041603 B = 0.011643 C = 0.009142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.867514 B = 2404.266567 C = 3061.989349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.455 5.455 3 C -0.083 4.083 4 C -0.001 4.001 5 C -0.445 4.445 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.847 5.847 9 Si 0.993 3.007 10 H -0.267 1.267 11 H -0.263 1.263 12 H -0.267 1.267 13 C -0.022 4.022 14 N -0.433 5.433 15 C -0.014 4.014 16 C 0.076 3.924 17 N -0.481 5.481 18 C 0.194 3.806 19 H 0.071 0.929 20 H 0.094 0.906 21 H 0.083 0.917 22 H 0.200 0.800 23 H 0.287 0.713 24 H 0.199 0.801 25 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -5.004 -0.065 5.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.141 5.141 3 C -0.209 4.209 4 C -0.007 4.007 5 C -0.477 4.477 6 H 0.082 0.918 7 C -0.191 4.191 8 N -0.477 5.477 9 Si 0.814 3.186 10 H -0.192 1.192 11 H -0.187 1.187 12 H -0.192 1.192 13 C -0.162 4.162 14 N -0.147 5.147 15 C -0.183 4.183 16 C -0.094 4.094 17 N -0.202 5.202 18 C -0.043 4.043 19 H 0.090 0.910 20 H 0.113 0.887 21 H 0.102 0.898 22 H 0.216 0.784 23 H 0.098 0.902 24 H 0.215 0.785 25 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.460 -4.502 -0.072 5.678 hybrid contribution 0.534 0.447 0.022 0.697 sum -2.925 -4.055 -0.051 5.000 Atomic orbital electron populations 1.22002 0.75923 1.04456 1.03268 1.43522 1.06818 1.02617 1.61129 1.23374 0.89123 0.90060 1.18358 1.18390 0.93877 0.86734 1.01682 1.18965 0.92879 0.91270 1.44600 0.91816 1.26544 1.00188 0.99426 0.92899 1.69392 1.23177 1.14875 1.40231 0.85069 0.77455 0.76578 0.79449 1.19151 1.18699 1.19157 1.21162 0.89700 0.95979 1.09345 1.67506 1.36816 1.02668 1.07698 1.23977 0.98285 0.92214 1.03869 1.24023 0.88983 1.00236 0.96206 1.67211 1.38275 0.98842 1.15870 1.19327 0.90413 0.88387 1.06150 0.91012 0.88698 0.89845 0.78367 0.90213 0.78479 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.84 11.04 127.77 1.41 4.25 15 2 N -0.46 -21.23 3.14 -541.62 -1.70 -22.93 15 3 C -0.08 -4.39 10.32 84.24 0.87 -3.52 15 4 C 0.00 -0.04 6.11 -19.97 -0.12 -0.16 15 5 C -0.44 -25.72 9.43 23.31 0.22 -25.50 15 6 H 0.06 3.72 7.84 -2.91 -0.02 3.69 15 7 C 0.02 0.96 5.49 85.18 0.47 1.42 15 8 N -0.85 -43.63 10.33 21.81 0.23 -43.40 15 9 Si 0.99 40.21 29.56 68.60 2.03 42.24 15 10 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 11 H -0.26 -9.79 7.11 99.48 0.71 -9.09 15 12 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 13 C -0.02 -1.19 7.48 42.12 0.32 -0.87 15 14 N -0.43 -21.36 10.53 -184.00 -1.94 -23.30 15 15 C -0.01 -0.50 11.22 84.76 0.95 0.45 15 16 C 0.08 2.57 11.20 84.77 0.95 3.52 15 17 N -0.48 -20.23 10.52 -192.21 -2.02 -22.26 15 18 C 0.19 9.54 7.85 133.75 1.05 10.59 15 19 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.09 2.78 8.13 -2.38 -0.02 2.77 15 21 H 0.08 2.57 8.13 -2.39 -0.02 2.55 15 22 H 0.20 10.47 5.68 -2.91 -0.02 10.46 15 23 H 0.29 13.32 8.30 -92.71 -0.77 12.55 15 24 H 0.20 5.17 8.06 -2.91 -0.02 5.15 15 25 H 0.21 4.56 8.06 -2.91 -0.02 4.54 15 Total: -1.00 -68.55 227.87 3.91 -64.64 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.21 Total: 14.82 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 6.11 Total: -9.81 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -5.44 Total: -111.89 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -68.55 3.91 -64.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214029971.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.167 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds