Wall clock time and date at job start Mon Mar 30 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32456 * 120.73704 * 2 1 4 4 C 1.32012 * 121.05270 * 180.02562 * 3 2 1 5 5 N 1.31654 * 122.58014 * 359.97319 * 4 3 2 6 6 C 1.32937 * 120.55720 * 0.02985 * 5 4 3 7 7 N 1.37261 * 133.77341 * 179.97438 * 6 5 4 8 8 H 0.97005 * 124.61453 * 0.03424 * 7 6 5 9 9 C 1.35891 * 110.76973 * 180.02562 * 7 6 5 10 10 C 1.38942 * 109.27262 * 359.97438 * 9 7 6 11 11 C 1.40876 * 127.00439 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00528 * 179.97438 * 11 10 9 13 13 C 1.39778 * 119.99712 * 359.93715 * 11 10 9 14 14 N 1.31022 * 120.00287 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99965 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47280 * 90.00041 * 15 13 11 17 17 H 1.48503 * 109.46963 * 209.99815 * 15 13 11 18 18 H 1.48502 * 109.46953 * 329.99671 * 15 13 11 19 19 C 1.38892 * 120.73853 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47884 * 89.99873 * 1 2 3 21 21 H 1.09000 * 109.47569 * 210.00323 * 1 2 3 22 22 H 1.09008 * 109.47275 * 330.00104 * 1 2 3 23 23 H 1.08001 * 118.71499 * 179.97438 * 4 3 2 24 24 H 1.07997 * 125.36407 * 180.02562 * 9 7 6 25 25 H 0.96998 * 120.00282 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1840 1.1385 0.0000 4 6 3.5041 1.1458 -0.0005 5 7 4.2191 0.0403 -0.0005 6 6 3.6249 -1.1489 -0.0006 7 7 4.0872 -2.4413 -0.0011 8 1 5.0245 -2.6913 -0.0010 9 6 3.0531 -3.3230 -0.0015 10 6 1.8532 -2.6224 -0.0007 11 6 0.5537 -3.1665 -0.0003 12 1 -0.3057 -2.5123 0.0007 13 6 0.3766 -4.5530 -0.0021 14 7 1.4191 -5.3466 -0.0036 15 14 -1.3465 -5.2745 -0.0023 16 1 -1.8037 -5.4639 -1.4024 17 1 -1.3344 -6.5850 0.6960 18 1 -2.2710 -4.3482 0.6994 19 6 2.2169 -1.1938 -0.0005 20 1 -0.3635 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8901 0.5138 23 1 4.0177 2.0958 -0.0009 24 1 3.1488 -4.3987 -0.0015 25 1 1.2962 -6.3088 -0.0051 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214030057.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:03 Heat of formation + Delta-G solvation = 48.116525 kcal Electronic energy + Delta-G solvation = -12510.770671 eV Core-core repulsion = 10295.675716 eV Total energy + Delta-G solvation = -2215.094955 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.21069 -39.04921 -35.84725 -34.67235 -32.03357 -30.70388 -28.83360 -26.82370 -24.01222 -23.37975 -21.45513 -19.55429 -18.07744 -17.46555 -16.86402 -16.11103 -15.90079 -15.43457 -14.43582 -14.19005 -14.00784 -13.57486 -13.32941 -13.18580 -12.85533 -12.84498 -12.21477 -11.69848 -11.46650 -11.18794 -10.84785 -9.92885 -9.67383 -8.77546 -8.47146 -6.10477 0.19952 0.64234 1.43739 1.48591 1.60567 2.22471 2.23877 2.35348 3.09989 3.48856 3.52720 3.74796 4.15839 4.31175 4.65000 4.82700 4.83009 4.92769 5.15142 5.33487 5.56795 5.64767 5.92637 6.25229 6.28957 6.61286 6.98018 7.07552 7.14767 7.56118 8.51246 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.045176 B = 0.011911 C = 0.009474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.655683 B = 2350.174637 C = 2954.686967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.212 3.788 3 N -0.577 5.577 4 C 0.287 3.713 5 N -0.565 5.565 6 C 0.266 3.734 7 N -0.547 5.547 8 H 0.414 0.586 9 C -0.117 4.117 10 C 0.017 3.983 11 C -0.446 4.446 12 H 0.091 0.909 13 C 0.017 3.983 14 N -0.848 5.848 15 Si 0.989 3.011 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.256 1.256 19 C -0.257 4.257 20 H 0.088 0.912 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.224 0.776 24 H 0.195 0.805 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 3.119 0.004 3.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.064 3.936 3 N -0.297 5.297 4 C -0.003 4.003 5 N -0.289 5.289 6 C 0.024 3.976 7 N -0.154 5.154 8 H 0.251 0.749 9 C -0.241 4.241 10 C 0.010 3.990 11 C -0.478 4.478 12 H 0.109 0.891 13 C -0.193 4.193 14 N -0.478 5.478 15 Si 0.811 3.189 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.180 1.180 19 C -0.269 4.269 20 H 0.107 0.893 21 H 0.100 0.900 22 H 0.108 0.892 23 H 0.240 0.760 24 H 0.211 0.789 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.964 3.545 0.011 3.674 hybrid contribution -0.112 -1.422 -0.032 1.426 sum -1.076 2.124 -0.022 2.381 Atomic orbital electron populations 1.20830 0.86870 1.03983 1.03826 1.21462 0.98074 0.86339 0.87730 1.68294 1.10145 1.28943 1.22347 1.25017 0.86909 0.95754 0.92618 1.67266 1.42343 0.96756 1.22491 1.18788 0.90517 0.86842 1.01499 1.41252 1.09430 1.01763 1.62905 0.74885 1.23418 0.84630 0.95213 1.20874 1.18342 0.94204 0.86890 0.99565 1.19296 0.92151 0.92310 1.44015 0.89102 1.26615 1.02729 0.97032 0.92911 1.69454 1.32629 1.05565 1.40137 0.85057 0.77029 0.77787 0.79040 1.19299 1.19965 1.18003 1.20905 0.95030 0.96815 1.14173 0.89346 0.89990 0.89166 0.75987 0.78892 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.51 9.80 71.24 0.70 -2.82 15 2 C 0.21 9.33 6.85 42.62 0.29 9.62 15 3 N -0.58 -23.69 10.38 -187.73 -1.95 -25.64 15 4 C 0.29 11.08 12.24 180.86 2.21 13.30 15 5 N -0.57 -24.62 10.47 -197.53 -2.07 -26.69 15 6 C 0.27 12.71 8.45 133.92 1.13 13.85 15 7 N -0.55 -24.73 5.95 -189.44 -1.13 -25.85 15 8 H 0.41 15.59 8.96 -92.70 -0.83 14.76 15 9 C -0.12 -5.90 10.89 84.23 0.92 -4.99 15 10 C 0.02 0.89 6.10 -20.04 -0.12 0.77 15 11 C -0.45 -22.64 8.92 23.29 0.21 -22.43 15 12 H 0.09 4.28 5.35 -2.91 -0.02 4.27 15 13 C 0.02 0.80 5.49 85.19 0.47 1.27 15 14 N -0.85 -41.85 10.34 21.81 0.23 -41.63 15 15 Si 0.99 36.80 29.56 68.60 2.03 38.83 15 16 H -0.27 -9.75 7.11 99.48 0.71 -9.04 15 17 H -0.27 -9.93 7.11 99.48 0.71 -9.22 15 18 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 19 C -0.26 -12.79 6.19 -20.06 -0.12 -12.92 15 20 H 0.09 2.91 8.14 -2.39 -0.02 2.89 15 21 H 0.08 3.08 5.52 -2.39 -0.01 3.07 15 22 H 0.09 2.75 8.14 -2.38 -0.02 2.73 15 23 H 0.22 6.29 8.06 -2.91 -0.02 6.26 15 24 H 0.19 9.91 5.69 -2.91 -0.02 9.89 15 25 H 0.28 12.78 8.30 -92.71 -0.77 12.01 15 Total: -1.00 -59.38 221.13 3.20 -56.18 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.41 Total: 29.16 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 5.68 Total: -4.36 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -4.92 Total: -119.81 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Total: -59.38 3.20 -56.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214030057.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.294 kcal (2) G-P(sol) polarization free energy of solvation -59.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds