Wall clock time and date at job start Mon Mar 30 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35531 * 124.71908 * 2 1 4 4 C 1.39007 * 109.32646 * 179.97438 * 3 2 1 5 5 C 1.40997 * 126.90066 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00136 * 179.97438 * 5 4 3 7 7 C 1.39775 * 119.99930 * 359.97438 * 5 4 3 8 8 N 1.31028 * 120.00026 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99881 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47311 * 59.99590 * 9 7 5 11 11 H 1.48503 * 109.47104 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46886 * 299.99418 * 9 7 5 13 13 C 1.47335 * 106.19469 * 0.02562 * 4 3 2 14 14 N 1.32828 * 134.75613 * 180.02562 * 13 4 3 15 15 C 1.31672 * 120.29659 * 179.97438 * 14 13 4 16 16 N 1.32053 * 122.15494 * 0.02562 * 15 14 13 17 17 C 1.32297 * 121.44486 * 359.97438 * 16 15 14 18 18 C 1.37881 * 124.71771 * 179.70404 * 2 1 3 19 19 H 1.09002 * 109.47391 * 90.02053 * 1 2 3 20 20 H 1.09001 * 109.46813 * 330.02110 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.02237 * 1 2 3 22 22 H 1.08001 * 125.33459 * 359.97438 * 3 2 1 23 23 H 0.97000 * 120.00203 * 180.02562 * 8 7 5 24 24 H 1.07997 * 118.91742 * 180.02562 * 15 14 13 25 25 H 1.08004 * 120.61236 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2369 1.1140 0.0000 4 6 3.5771 0.7450 0.0006 5 6 4.6926 1.6074 0.0013 6 1 5.6919 1.1977 0.0021 7 6 4.5052 2.9925 0.0009 8 7 3.2928 3.4896 -0.0006 9 14 5.9830 4.1350 0.0011 10 1 6.8032 3.8836 -1.2109 11 1 5.5184 5.5455 0.0012 12 1 6.8023 3.8843 1.2140 13 6 3.5977 -0.7282 0.0003 14 7 4.5540 -1.6501 0.0011 15 6 4.2431 -2.9296 0.0010 16 7 2.9908 -3.3485 -0.0002 17 6 1.9782 -2.4971 -0.0010 18 6 2.2503 -1.1333 0.0059 19 1 -0.3634 -0.0004 -1.0277 20 1 -0.3633 0.8902 0.5135 21 1 -0.3633 -0.8898 0.5142 22 1 1.8685 2.1292 -0.0004 23 1 3.1627 4.4508 -0.0013 24 1 5.0383 -3.6602 0.0021 25 1 0.9590 -2.8546 -0.0015 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214030403.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:56 Heat of formation + Delta-G solvation = 56.181395 kcal Electronic energy + Delta-G solvation = -12434.701052 eV Core-core repulsion = 10219.955816 eV Total energy + Delta-G solvation = -2214.745236 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.23484 -39.23519 -35.81607 -34.33417 -32.25779 -30.67794 -28.67190 -26.09957 -24.68020 -23.29004 -21.31237 -19.17716 -18.02287 -17.93103 -16.74379 -16.30671 -16.28232 -15.22748 -14.74381 -14.48880 -14.20145 -13.48910 -13.23302 -13.08397 -12.89097 -12.53854 -12.02923 -11.98320 -11.79268 -11.72892 -11.13071 -9.82132 -9.23085 -8.94079 -8.50983 -6.09182 0.21735 0.54890 1.39998 1.41810 1.52958 2.14330 2.22358 2.34255 3.05395 3.53519 3.55715 3.57488 4.00769 4.04528 4.21037 4.56080 4.66091 4.75842 5.00218 5.20696 5.42927 5.66354 5.86852 6.16371 6.36535 6.55723 6.85587 7.02295 7.05347 7.57125 8.48110 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.041329 B = 0.011601 C = 0.009103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.325380 B = 2412.907569 C = 3075.088427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.455 5.455 3 C -0.065 4.065 4 C -0.015 4.015 5 C -0.448 4.448 6 H 0.059 0.941 7 C 0.019 3.981 8 N -0.849 5.849 9 Si 0.990 3.010 10 H -0.268 1.268 11 H -0.262 1.262 12 H -0.268 1.268 13 C 0.043 3.957 14 N -0.504 5.504 15 C 0.203 3.797 16 N -0.521 5.521 17 C 0.141 3.859 18 C -0.030 4.030 19 H 0.078 0.922 20 H 0.090 0.910 21 H 0.099 0.901 22 H 0.198 0.802 23 H 0.286 0.714 24 H 0.210 0.790 25 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.110 -2.879 0.082 6.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.137 5.137 3 C -0.195 4.195 4 C -0.021 4.021 5 C -0.480 4.480 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.479 5.479 9 Si 0.812 3.188 10 H -0.193 1.193 11 H -0.186 1.186 12 H -0.193 1.193 13 C -0.099 4.099 14 N -0.218 5.218 15 C -0.086 4.086 16 N -0.235 5.235 17 C -0.036 4.036 18 C -0.147 4.147 19 H 0.096 0.904 20 H 0.109 0.891 21 H 0.117 0.883 22 H 0.214 0.786 23 H 0.097 0.903 24 H 0.227 0.773 25 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.731 -3.176 0.080 6.552 hybrid contribution 0.166 1.127 -0.011 1.139 sum -5.564 -2.048 0.069 5.930 Atomic orbital electron populations 1.22167 0.75202 1.05263 1.03827 1.43590 1.06978 1.03065 1.60109 1.23452 0.89208 0.90906 1.15886 1.18425 0.94051 0.86698 1.02931 1.18944 0.92863 0.91338 1.44858 0.92236 1.26463 1.00099 0.99333 0.93056 1.69379 1.22968 1.14790 1.40769 0.85111 0.77637 0.76729 0.79342 1.19324 1.18617 1.19322 1.20822 0.88963 0.95184 1.04969 1.67524 1.38807 1.02601 1.12832 1.24806 0.93259 0.90234 1.00296 1.68183 1.00851 1.38499 1.15988 1.22532 0.99992 0.84796 0.96310 1.20017 0.93067 0.91523 1.10090 0.90375 0.89117 0.88273 0.78614 0.90295 0.77330 0.78913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.03 11.00 127.77 1.40 3.43 15 2 N -0.46 -18.89 3.14 -535.88 -1.68 -20.58 15 3 C -0.07 -3.26 10.31 84.31 0.87 -2.40 15 4 C -0.02 -0.85 6.10 -20.02 -0.12 -0.97 15 5 C -0.45 -25.84 9.43 23.32 0.22 -25.62 15 6 H 0.06 3.51 7.84 -2.91 -0.02 3.48 15 7 C 0.02 0.99 5.49 85.18 0.47 1.45 15 8 N -0.85 -43.18 10.33 21.81 0.23 -42.96 15 9 Si 0.99 40.35 29.56 68.60 2.03 42.38 15 10 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 11 H -0.26 -9.79 7.11 99.48 0.71 -9.09 15 12 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 13 C 0.04 2.28 7.54 41.99 0.32 2.59 15 14 N -0.50 -25.55 10.49 -189.26 -1.98 -27.53 15 15 C 0.20 8.48 12.27 180.84 2.22 10.70 15 16 N -0.52 -20.33 10.41 -199.60 -2.08 -22.41 15 17 C 0.14 5.21 11.25 84.82 0.95 6.16 15 18 C -0.03 -1.34 6.81 39.00 0.27 -1.08 15 19 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 20 H 0.09 2.21 8.13 -2.39 -0.02 2.19 15 21 H 0.10 2.03 8.10 -2.38 -0.02 2.01 15 22 H 0.20 9.92 5.68 -2.91 -0.02 9.91 15 23 H 0.29 13.15 8.30 -92.71 -0.77 12.38 15 24 H 0.21 6.92 8.06 -2.91 -0.02 6.90 15 25 H 0.19 5.07 8.06 -2.91 -0.02 5.05 15 Total: -1.00 -66.83 227.75 4.31 -62.52 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.21 Total: 14.30 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 6.60 Total: -5.73 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -5.52 Total: -113.47 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -66.83 4.31 -62.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214030403.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.703 kcal (2) G-P(sol) polarization free energy of solvation -66.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds