Wall clock time and date at job start Mon Mar 30 2020 02:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35882 * 124.62451 * 2 1 4 4 C 1.38938 * 109.27275 * 179.97438 * 3 2 1 5 5 C 1.40879 * 127.00944 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00463 * 161.23913 * 5 4 3 7 7 C 1.39780 * 119.99891 * 341.24821 * 5 4 3 8 8 N 1.31018 * 119.99925 * 164.43073 * 7 5 4 9 9 Si 1.86795 * 119.99927 * 344.43171 * 7 5 4 10 10 H 1.48498 * 109.47617 * 90.89683 * 9 7 5 11 11 H 1.48502 * 109.47275 * 210.90037 * 9 7 5 12 12 H 1.48502 * 109.47114 * 330.89733 * 9 7 5 13 13 C 1.47420 * 105.99089 * 359.97438 * 4 3 2 14 14 C 1.38941 * 134.97484 * 180.02562 * 13 4 3 15 15 N 1.32420 * 118.52160 * 179.97438 * 14 13 4 16 16 C 1.32048 * 121.05308 * 359.97438 * 15 14 13 17 17 N 1.31625 * 122.57787 * 359.97438 * 16 15 14 18 18 C 1.32961 * 120.56587 * 359.74526 * 17 16 15 19 19 H 1.09003 * 109.47109 * 90.01799 * 1 2 3 20 20 H 1.09007 * 109.46508 * 330.03061 * 1 2 3 21 21 H 1.08993 * 109.47727 * 210.02654 * 1 2 3 22 22 H 1.08005 * 125.36275 * 359.97438 * 3 2 1 23 23 H 0.96999 * 120.00119 * 180.02562 * 8 7 5 24 24 H 1.08000 * 120.73562 * 359.92993 * 14 13 4 25 25 H 1.08002 * 118.71092 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2371 1.1182 0.0000 4 6 3.5769 0.7503 0.0006 5 6 4.6925 1.6107 0.0013 6 1 5.6608 1.2392 0.3025 7 6 4.5461 2.9452 -0.3877 8 7 5.4831 3.8164 -0.1054 9 14 3.0146 3.4866 -1.3100 10 1 1.9847 3.9358 -0.3390 11 1 3.3564 4.6070 -2.2227 12 1 2.4848 2.3473 -2.1016 13 6 3.5933 -0.7238 0.0016 14 6 4.5871 -1.6948 0.0030 15 7 4.2263 -2.9689 0.0041 16 6 2.9522 -3.3159 0.0045 17 7 1.9769 -2.4321 0.0042 18 6 2.2446 -1.1297 0.0087 19 1 -0.3633 -0.0003 -1.0277 20 1 -0.3632 0.8903 0.5134 21 1 -0.3634 -0.8897 0.5142 22 1 1.8675 2.1330 -0.0004 23 1 5.3813 4.7426 -0.3750 24 1 5.6307 -1.4166 0.0024 25 1 2.7006 -4.3662 0.0050 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214030486.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:00 Heat of formation + Delta-G solvation = 62.991839 kcal Electronic energy + Delta-G solvation = -12518.164511 eV Core-core repulsion = 10303.714598 eV Total energy + Delta-G solvation = -2214.449913 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.39813 -39.38401 -35.84406 -34.27654 -33.19160 -30.80371 -28.84347 -26.11061 -24.95443 -23.30536 -21.65656 -19.39451 -18.50951 -17.51629 -17.19755 -16.53806 -16.03796 -15.45441 -15.13669 -14.76443 -14.21989 -13.79307 -13.68626 -13.31431 -13.03796 -12.66202 -12.35244 -11.82616 -11.62443 -11.41386 -11.02650 -9.99200 -9.63453 -9.05991 -8.81820 -6.26818 0.04903 0.52442 1.19459 1.34501 1.48314 1.80234 1.88270 2.15632 2.98406 3.30728 3.47266 3.51781 3.92357 4.06289 4.22566 4.43925 4.47255 4.64883 4.73881 4.82432 5.27700 5.46468 5.63203 6.05425 6.17374 6.31528 6.51750 6.75435 6.85219 7.42644 8.27136 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.013581 C = 0.010494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.452696 B = 2061.145336 C = 2667.461775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.445 5.445 3 C -0.168 4.168 4 C 0.036 3.964 5 C -0.447 4.447 6 H 0.062 0.938 7 C 0.045 3.955 8 N -0.856 5.856 9 Si 0.962 3.038 10 H -0.250 1.250 11 H -0.281 1.281 12 H -0.254 1.254 13 C -0.258 4.258 14 C 0.203 3.797 15 N -0.573 5.573 16 C 0.298 3.702 17 N -0.556 5.556 18 C 0.291 3.709 19 H 0.075 0.925 20 H 0.097 0.903 21 H 0.089 0.911 22 H 0.162 0.838 23 H 0.293 0.707 24 H 0.168 0.832 25 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 -4.654 -1.196 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.132 5.132 3 C -0.290 4.290 4 C 0.028 3.972 5 C -0.479 4.479 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.484 5.484 9 Si 0.787 3.213 10 H -0.176 1.176 11 H -0.208 1.208 12 H -0.178 1.178 13 C -0.270 4.270 14 C 0.035 3.965 15 N -0.292 5.292 16 C 0.008 3.992 17 N -0.278 5.278 18 C 0.049 3.951 19 H 0.094 0.906 20 H 0.116 0.884 21 H 0.107 0.893 22 H 0.179 0.821 23 H 0.103 0.897 24 H 0.185 0.815 25 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.156 -5.234 -1.191 10.613 hybrid contribution 0.074 1.446 -0.241 1.467 sum -9.082 -3.789 -1.432 9.944 Atomic orbital electron populations 1.22129 0.75424 1.05044 1.03713 1.43019 1.06899 1.02047 1.61193 1.21789 0.89639 0.89732 1.27795 1.18199 0.92275 0.89200 0.97532 1.18622 0.95128 0.93815 1.40340 0.91953 1.26644 1.00285 0.95507 0.94358 1.69759 1.35818 1.04805 1.37981 0.85569 0.78376 0.77863 0.79501 1.17595 1.20826 1.17775 1.20935 0.95478 0.96503 1.14115 1.22671 0.99617 0.86850 0.87353 1.68504 1.21074 1.18348 1.21276 1.25196 0.82915 0.99848 0.91224 1.67302 1.39447 0.99036 1.22033 1.18596 0.88691 0.87725 1.00045 0.90641 0.88396 0.89270 0.82110 0.89717 0.81474 0.75462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 11.03 127.77 1.41 3.64 15 2 N -0.44 -18.26 3.13 -541.56 -1.70 -19.95 15 3 C -0.17 -7.65 8.70 84.23 0.73 -6.92 15 4 C 0.04 1.81 5.66 -20.04 -0.11 1.69 15 5 C -0.45 -24.41 9.94 23.29 0.23 -24.18 15 6 H 0.06 3.62 8.06 -2.91 -0.02 3.60 15 7 C 0.05 2.36 5.51 85.19 0.47 2.83 15 8 N -0.86 -45.81 13.94 21.81 0.30 -45.51 15 9 Si 0.96 40.43 24.54 68.60 1.68 42.11 15 10 H -0.25 -9.59 6.70 99.48 0.67 -8.92 15 11 H -0.28 -11.27 7.11 99.48 0.71 -10.57 15 12 H -0.25 -10.92 6.56 99.48 0.65 -10.27 15 13 C -0.26 -12.23 6.39 -20.05 -0.13 -12.36 15 14 C 0.20 8.62 11.36 84.77 0.96 9.58 15 15 N -0.57 -22.08 10.44 -199.65 -2.08 -24.16 15 16 C 0.30 10.40 12.24 180.86 2.21 12.61 15 17 N -0.56 -21.83 10.47 -197.53 -2.07 -23.90 15 18 C 0.29 12.82 7.90 133.90 1.06 13.88 15 19 H 0.08 1.94 8.14 -2.39 -0.02 1.92 15 20 H 0.10 2.34 8.13 -2.38 -0.02 2.32 15 21 H 0.09 2.35 8.13 -2.39 -0.02 2.33 15 22 H 0.16 6.84 4.16 -2.91 -0.01 6.83 15 23 H 0.29 14.09 8.30 -92.71 -0.77 13.32 15 24 H 0.17 6.53 8.06 -2.91 -0.02 6.51 15 25 H 0.23 5.57 8.06 -2.91 -0.02 5.55 15 Total: -1.00 -62.12 222.64 4.09 -58.03 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.12 Total: 12.61 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 6.84 Total: 0.77 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -5.54 Total: -113.53 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.68 Total: 42.11 kcal Total: -62.12 4.09 -58.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214030486.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.024 kcal (2) G-P(sol) polarization free energy of solvation -62.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds