Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40216 * 126.63114 * 2 1 4 4 N 1.28633 * 109.54409 * 180.02562 * 3 2 1 5 5 C 1.35510 * 110.10990 * 0.02562 * 4 3 2 6 6 C 1.39564 * 132.97455 * 180.31014 * 5 4 3 7 7 C 1.40143 * 119.45243 * 180.22315 * 6 5 4 8 8 C 1.41352 * 119.97088 * 179.72966 * 7 6 5 9 9 H 1.08007 * 119.99731 * 149.63388 * 8 7 6 10 10 C 1.39884 * 120.00260 * 329.90516 * 8 7 6 11 11 N 1.30875 * 119.99892 * 161.74014 * 10 8 7 12 12 Si 1.86795 * 120.00324 * 341.74743 * 10 8 7 13 13 H 1.48507 * 109.47296 * 95.39984 * 12 10 8 14 14 H 1.48498 * 109.47634 * 215.40185 * 12 10 8 15 15 H 1.48500 * 109.47013 * 335.40422 * 12 10 8 16 16 C 1.41189 * 120.04765 * 359.45632 * 7 6 5 17 17 C 1.35934 * 120.36738 * 0.24817 * 16 7 6 18 18 C 1.37227 * 126.63982 * 180.02562 * 2 1 3 19 19 H 1.08993 * 109.47342 * 269.99647 * 1 2 3 20 20 H 1.09003 * 109.47305 * 29.99848 * 1 2 3 21 21 H 1.09000 * 109.47104 * 149.99529 * 1 2 3 22 22 H 1.07997 * 120.27178 * 359.97271 * 6 5 4 23 23 H 0.97000 * 120.00317 * 179.97438 * 11 10 8 24 24 H 1.08005 * 119.81552 * 180.27530 * 16 7 6 25 25 H 1.08004 * 119.85237 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3016 1.1252 0.0000 4 7 3.5312 0.7473 -0.0005 5 6 3.6026 -0.6059 -0.0015 6 6 4.6725 -1.5022 0.0032 7 6 4.4172 -2.8801 -0.0043 8 6 5.4925 -3.7975 -0.0054 9 1 5.3781 -4.7643 0.4624 10 6 6.7067 -3.4513 -0.6075 11 7 7.7954 -4.1158 -0.3144 12 14 6.7744 -2.0402 -1.8297 13 1 7.1843 -0.7970 -1.1283 14 1 7.7595 -2.3551 -2.8953 15 1 5.4332 -1.8466 -2.4369 16 6 3.0867 -3.3526 -0.0048 17 6 2.0466 -2.4773 -0.0031 18 6 2.2840 -1.1011 -0.0005 19 1 -0.3633 -0.0001 1.0276 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3633 -0.8899 -0.5139 22 1 5.6888 -1.1367 0.0083 23 1 8.6374 -3.8760 -0.7322 24 1 2.8942 -4.4153 -0.0060 25 1 1.0321 -2.8478 -0.0039 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214030587.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = 100.992779 kcal Electronic energy + Delta-G solvation = -12420.229623 eV Core-core repulsion = 10207.427555 eV Total energy + Delta-G solvation = -2212.802068 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.92001 -36.75222 -33.94527 -33.38744 -30.19854 -29.44038 -27.04664 -25.09511 -22.81118 -21.02595 -20.27910 -17.80713 -16.50686 -16.27937 -15.29621 -14.87777 -14.15180 -13.50044 -13.03780 -12.92355 -12.83799 -12.53639 -11.68956 -11.43724 -11.07237 -10.85694 -10.65201 -10.35418 -10.18433 -9.68577 -9.61612 -9.11417 -7.87068 -7.34705 -7.00261 -4.55253 1.44266 2.43001 2.88461 3.07668 3.19961 3.30699 3.34702 3.99659 4.33197 4.90267 5.10898 5.24856 5.31247 5.47586 5.61644 5.91316 6.09986 6.23491 6.39031 6.82832 6.92156 7.18594 7.23765 7.49307 7.58233 7.72953 8.20738 8.41945 8.69894 8.95270 10.01140 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.051369 B = 0.011650 C = 0.010053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.946783 B = 2402.767799 C = 2784.603075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.404 5.404 3 N -0.049 5.049 4 N -0.255 5.255 5 C 0.042 3.958 6 C -0.216 4.216 7 C 0.076 3.924 8 C -0.439 4.439 9 H 0.095 0.905 10 C 0.087 3.913 11 N -0.804 5.804 12 Si 0.908 3.092 13 H -0.266 1.266 14 H -0.291 1.291 15 H -0.246 1.246 16 C -0.104 4.104 17 C -0.110 4.110 18 C 0.001 3.999 19 H 0.068 0.932 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.114 0.886 23 H 0.287 0.713 24 H 0.121 0.879 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 1.998 -1.165 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.204 5.204 3 N -0.028 5.028 4 N -0.133 5.133 5 C -0.081 4.081 6 C -0.240 4.240 7 C 0.071 3.929 8 C -0.468 4.468 9 H 0.113 0.887 10 C -0.133 4.133 11 N -0.427 5.427 12 Si 0.735 3.265 13 H -0.191 1.191 14 H -0.218 1.218 15 H -0.170 1.170 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.118 4.118 19 H 0.087 0.913 20 H 0.102 0.898 21 H 0.100 0.900 22 H 0.131 0.869 23 H 0.097 0.903 24 H 0.139 0.861 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.380 3.453 -1.166 10.063 hybrid contribution -0.084 -0.482 -0.499 0.699 sum -9.464 2.971 -1.666 10.059 Atomic orbital electron populations 1.21665 0.74924 1.03840 1.02735 1.49593 1.06470 1.04193 1.60120 1.81268 0.94744 1.08287 1.18473 1.74692 1.10654 1.12024 1.15944 1.19687 0.93387 0.88752 1.06277 1.20096 0.95523 0.91229 1.17189 1.17519 0.92623 0.91346 0.91404 1.19397 0.93759 1.02389 1.31266 0.88662 1.26127 0.94349 0.96516 0.96332 1.69700 0.99991 1.37659 1.35393 0.86302 0.79755 0.80499 0.79969 1.19143 1.21819 1.16972 1.21060 0.92205 0.98387 1.01026 1.19424 0.98788 0.88491 1.06466 1.19050 0.90615 0.89835 1.12292 0.91299 0.89753 0.89994 0.86886 0.90254 0.86117 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.37 11.52 59.85 0.69 2.05 15 2 N -0.40 -7.72 4.10 -65.31 -0.27 -7.99 15 3 N -0.05 -1.07 13.71 60.35 0.83 -0.24 15 4 N -0.25 -6.18 12.40 32.15 0.40 -5.78 15 5 C 0.04 1.02 7.25 -84.76 -0.61 0.40 15 6 C -0.22 -5.43 7.23 -38.37 -0.28 -5.71 15 7 C 0.08 1.85 5.10 -106.88 -0.55 1.30 15 8 C -0.44 -11.25 9.55 -37.78 -0.36 -11.61 15 9 H 0.10 2.48 8.06 -52.48 -0.42 2.06 15 10 C 0.09 2.22 5.40 -17.34 -0.09 2.12 15 11 N -0.80 -20.88 13.93 55.54 0.77 -20.11 15 12 Si 0.91 21.16 24.52 -169.99 -4.17 16.99 15 13 H -0.27 -6.25 6.71 56.52 0.38 -5.87 15 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 15 H -0.25 -5.94 6.87 56.52 0.39 -5.56 15 16 C -0.10 -2.16 9.70 -39.29 -0.38 -2.54 15 17 C -0.11 -2.10 9.96 -39.88 -0.40 -2.50 15 18 C 0.00 0.02 6.94 -83.93 -0.58 -0.57 15 19 H 0.07 0.73 8.14 -51.93 -0.42 0.30 15 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.11 2.92 4.75 -52.49 -0.25 2.67 15 23 H 0.29 6.79 8.30 -40.82 -0.34 6.45 15 24 H 0.12 2.18 8.06 -52.48 -0.42 1.75 15 25 H 0.11 1.63 8.06 -52.48 -0.42 1.21 15 LS Contribution 223.64 15.07 3.37 3.37 Total: -1.00 -29.38 223.64 -3.58 -32.96 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -1.96 Total: -2.17 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.56 Total: -17.04 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 1.73 Total: -34.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.17 Total: 16.99 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.38 -3.58 -32.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214030587.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.957 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds