Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40216 * 126.63114 * 2 1 4 4 N 1.28633 * 109.54409 * 180.02562 * 3 2 1 5 5 C 1.35510 * 110.10990 * 0.02562 * 4 3 2 6 6 C 1.39564 * 132.97455 * 180.31014 * 5 4 3 7 7 C 1.40143 * 119.45243 * 180.22315 * 6 5 4 8 8 C 1.41352 * 119.97088 * 179.72966 * 7 6 5 9 9 H 1.08007 * 119.99731 * 149.63388 * 8 7 6 10 10 C 1.39884 * 120.00260 * 329.90516 * 8 7 6 11 11 N 1.30875 * 119.99892 * 161.74014 * 10 8 7 12 12 Si 1.86795 * 120.00324 * 341.74743 * 10 8 7 13 13 H 1.48507 * 109.47296 * 95.39984 * 12 10 8 14 14 H 1.48498 * 109.47634 * 215.40185 * 12 10 8 15 15 H 1.48500 * 109.47013 * 335.40422 * 12 10 8 16 16 C 1.41189 * 120.04765 * 359.45632 * 7 6 5 17 17 C 1.35934 * 120.36738 * 0.24817 * 16 7 6 18 18 C 1.37227 * 126.63982 * 180.02562 * 2 1 3 19 19 H 1.08993 * 109.47342 * 269.99647 * 1 2 3 20 20 H 1.09003 * 109.47305 * 29.99848 * 1 2 3 21 21 H 1.09000 * 109.47104 * 149.99529 * 1 2 3 22 22 H 1.07997 * 120.27178 * 359.97271 * 6 5 4 23 23 H 0.97000 * 120.00317 * 179.97438 * 11 10 8 24 24 H 1.08005 * 119.81552 * 180.27530 * 16 7 6 25 25 H 1.08004 * 119.85237 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3016 1.1252 0.0000 4 7 3.5312 0.7473 -0.0005 5 6 3.6026 -0.6059 -0.0015 6 6 4.6725 -1.5022 0.0032 7 6 4.4172 -2.8801 -0.0043 8 6 5.4925 -3.7975 -0.0054 9 1 5.3781 -4.7643 0.4624 10 6 6.7067 -3.4513 -0.6075 11 7 7.7954 -4.1158 -0.3144 12 14 6.7744 -2.0402 -1.8297 13 1 7.1843 -0.7970 -1.1283 14 1 7.7595 -2.3551 -2.8953 15 1 5.4332 -1.8466 -2.4369 16 6 3.0867 -3.3526 -0.0048 17 6 2.0466 -2.4773 -0.0031 18 6 2.2840 -1.1011 -0.0005 19 1 -0.3633 -0.0001 1.0276 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3633 -0.8899 -0.5139 22 1 5.6888 -1.1367 0.0083 23 1 8.6374 -3.8760 -0.7322 24 1 2.8942 -4.4153 -0.0060 25 1 1.0321 -2.8478 -0.0039 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214030587.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = 80.405292 kcal Electronic energy + Delta-G solvation = -12421.122363 eV Core-core repulsion = 10207.427555 eV Total energy + Delta-G solvation = -2213.694809 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.59903 -38.48692 -35.54339 -35.15724 -31.93419 -31.13663 -28.37318 -26.90624 -24.49082 -22.76587 -21.89651 -19.62690 -18.09578 -18.01043 -16.83277 -16.67480 -15.89313 -15.10573 -14.69860 -14.51725 -14.22550 -13.77925 -13.50537 -13.15550 -12.75824 -12.64717 -12.33856 -12.15484 -11.96891 -11.46345 -11.26366 -10.93967 -9.60647 -9.04972 -8.93120 -6.49475 -0.23077 0.66603 1.27822 1.30511 1.45341 1.47636 1.53056 2.11449 2.48072 3.33268 3.53043 3.75323 3.99290 4.31985 4.43442 4.54739 4.64424 4.68002 4.78369 5.13533 5.18962 5.44802 5.50627 5.72844 5.91603 6.04250 6.28436 6.55536 6.80434 7.25546 8.13614 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.051369 B = 0.011650 C = 0.010053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.946783 B = 2402.767799 C = 2784.603075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.383 5.383 3 N -0.056 5.056 4 N -0.295 5.295 5 C 0.010 3.990 6 C -0.244 4.244 7 C 0.068 3.932 8 C -0.463 4.463 9 H 0.082 0.918 10 C 0.061 3.939 11 N -0.837 5.837 12 Si 0.952 3.048 13 H -0.279 1.279 14 H -0.274 1.274 15 H -0.260 1.260 16 C -0.107 4.107 17 C -0.088 4.088 18 C 0.005 3.995 19 H 0.095 0.905 20 H 0.105 0.895 21 H 0.114 0.886 22 H 0.092 0.908 23 H 0.294 0.706 24 H 0.151 0.849 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.916 1.849 -1.479 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.183 5.183 3 N -0.035 5.035 4 N -0.172 5.172 5 C -0.114 4.114 6 C -0.269 4.269 7 C 0.063 3.937 8 C -0.492 4.492 9 H 0.100 0.900 10 C -0.155 4.155 11 N -0.463 5.463 12 Si 0.778 3.222 13 H -0.206 1.206 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.129 4.129 17 C -0.109 4.109 18 C -0.116 4.116 19 H 0.113 0.887 20 H 0.123 0.877 21 H 0.132 0.868 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.169 0.831 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.694 3.329 -1.485 13.207 hybrid contribution 0.630 -0.346 -0.345 0.797 sum -12.064 2.983 -1.830 12.561 Atomic orbital electron populations 1.22347 0.70563 1.06575 1.05289 1.50132 1.08676 1.02656 1.56835 1.81160 0.94506 1.09292 1.18540 1.74672 1.12013 1.12324 1.18160 1.19952 0.94882 0.89149 1.07435 1.20033 0.95110 0.92094 1.19637 1.17703 0.94207 0.90672 0.91129 1.19465 0.94800 1.02363 1.32621 0.89950 1.26533 0.94325 0.97562 0.97113 1.69710 1.00554 1.39153 1.36887 0.85650 0.79113 0.78467 0.78988 1.20610 1.20018 1.18440 1.21374 0.90854 1.00401 1.00276 1.19918 1.01050 0.86800 1.03156 1.19438 0.89898 0.91358 1.10884 0.88701 0.87675 0.86797 0.89050 0.89504 0.83091 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.73 11.52 127.77 1.47 3.20 15 2 N -0.38 -13.16 4.10 -360.53 -1.48 -14.64 15 3 N -0.06 -2.36 13.71 37.02 0.51 -1.85 15 4 N -0.29 -14.29 12.40 -52.21 -0.65 -14.94 15 5 C 0.01 0.49 7.25 39.54 0.29 0.78 15 6 C -0.24 -12.49 7.23 23.05 0.17 -12.32 15 7 C 0.07 3.28 5.10 -21.33 -0.11 3.17 15 8 C -0.46 -24.16 9.55 23.44 0.22 -23.94 15 9 H 0.08 4.39 8.06 -2.91 -0.02 4.37 15 10 C 0.06 3.22 5.40 85.23 0.46 3.68 15 11 N -0.84 -44.63 13.93 21.82 0.30 -44.32 15 12 Si 0.95 44.96 24.52 68.60 1.68 46.64 15 13 H -0.28 -13.62 6.71 99.48 0.67 -12.96 15 14 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 15 H -0.26 -12.71 6.87 99.48 0.68 -12.03 15 16 C -0.11 -4.10 9.70 22.46 0.22 -3.89 15 17 C -0.09 -2.93 9.96 22.08 0.22 -2.71 15 18 C 0.01 0.21 6.94 39.28 0.27 0.48 15 19 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.10 1.63 8.14 -2.39 -0.02 1.61 15 21 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.09 4.95 4.75 -2.91 -0.01 4.93 15 23 H 0.29 14.27 8.30 -92.71 -0.77 13.50 15 24 H 0.15 4.85 8.06 -2.91 -0.02 4.83 15 25 H 0.17 3.68 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -65.80 223.64 4.72 -61.08 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 1.15 Total: -0.41 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.21 Total: -31.56 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.32 Total: -75.75 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.68 Total: 46.64 kcal Total: -65.80 4.72 -61.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214030587.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.485 kcal (2) G-P(sol) polarization free energy of solvation -65.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds