Wall clock time and date at job start Mon Mar 30 2020 02:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28810 * 125.97542 * 2 1 4 4 N 1.28620 * 111.84960 * 180.02562 * 3 2 1 5 5 C 1.34564 * 109.38589 * 359.97438 * 4 3 2 6 6 C 1.40311 * 134.45240 * 180.02562 * 5 4 3 7 7 C 1.35757 * 120.12175 * 180.25499 * 6 5 4 8 8 C 1.41279 * 120.45734 * 359.49534 * 7 6 5 9 9 C 1.41157 * 119.99114 * 180.26016 * 8 7 6 10 10 H 1.07996 * 120.00040 * 330.31250 * 9 8 7 11 11 C 1.39973 * 120.00194 * 150.31851 * 9 8 7 12 12 N 1.30818 * 119.99881 * 161.73062 * 11 9 8 13 13 Si 1.86800 * 119.99779 * 341.73248 * 11 9 8 14 14 H 1.48503 * 109.47373 * 95.41428 * 13 11 9 15 15 H 1.48504 * 109.47266 * 215.41673 * 13 11 9 16 16 H 1.48505 * 109.47220 * 335.41272 * 13 11 9 17 17 C 1.40493 * 120.01505 * 0.50362 * 8 7 6 18 18 C 1.37514 * 125.97690 * 180.02562 * 2 1 3 19 19 H 1.09001 * 109.47077 * 90.02795 * 1 2 3 20 20 H 1.09000 * 109.46694 * 210.02692 * 1 2 3 21 21 H 1.08998 * 109.47152 * 330.02699 * 1 2 3 22 22 H 1.08006 * 119.94598 * 359.97438 * 6 5 4 23 23 H 1.08004 * 119.77230 * 179.74953 * 7 6 5 24 24 H 0.97007 * 119.99471 * 180.02562 * 12 11 9 25 25 H 1.08001 * 120.29305 * 179.72692 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2217 1.0424 0.0000 4 7 3.4690 0.7285 -0.0005 5 6 3.5924 -0.6115 -0.0004 6 6 4.6799 -1.4981 -0.0003 7 6 4.4658 -2.8387 -0.0053 8 6 3.1504 -3.3539 0.0000 9 6 2.9392 -4.7496 0.0003 10 1 3.6598 -5.4048 -0.4663 11 6 1.7958 -5.2844 0.6051 12 7 1.4079 -6.4988 0.3117 13 14 0.8238 -4.2639 1.8312 14 1 -0.3023 -3.5924 1.1338 15 1 0.2888 -5.1484 2.8974 16 1 1.7121 -3.2397 2.4372 17 6 2.0523 -2.4775 0.0000 18 6 2.2729 -1.1128 -0.0005 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5134 22 1 5.6891 -1.1135 -0.0008 23 1 5.3071 -3.5161 -0.0093 24 1 0.6153 -6.8692 0.7307 25 1 1.0448 -2.8665 -0.0004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214030670.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:30 Heat of formation + Delta-G solvation = 99.993898 kcal Electronic energy + Delta-G solvation = -12560.766312 eV Core-core repulsion = 10347.920929 eV Total energy + Delta-G solvation = -2212.845383 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.88631 -36.97617 -34.07459 -33.48707 -30.22310 -29.66974 -27.26278 -25.33311 -22.77610 -21.33635 -20.04480 -17.99030 -16.65168 -16.39954 -15.69610 -15.00148 -14.07971 -13.47252 -13.07663 -12.96009 -12.85190 -12.45986 -11.83211 -11.25011 -11.09241 -10.93882 -10.57937 -10.41709 -10.22626 -9.71107 -9.65698 -9.24247 -7.87181 -7.32989 -7.23800 -4.73935 1.77003 2.47425 2.90324 3.05494 3.13622 3.16420 3.37494 3.79460 4.28882 4.99998 5.11568 5.23084 5.39752 5.59691 5.80334 6.09936 6.33713 6.36978 6.38274 6.81050 6.87111 7.26275 7.33500 7.48968 7.65627 7.71394 8.04341 8.31149 8.49745 9.43989 9.75953 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.038491 B = 0.014182 C = 0.011095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.275416 B = 1973.803278 C = 2523.137841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.361 5.361 3 N -0.099 5.099 4 N -0.251 5.251 5 C -0.090 4.090 6 C -0.038 4.038 7 C -0.155 4.155 8 C 0.112 3.888 9 C -0.419 4.419 10 H 0.100 0.900 11 C 0.083 3.917 12 N -0.788 5.788 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.289 1.289 16 H -0.243 1.243 17 C -0.284 4.284 18 C 0.098 3.902 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.114 0.886 23 H 0.119 0.881 24 H 0.291 0.709 25 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 3.596 1.287 4.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 N -0.077 5.077 4 N -0.126 5.126 5 C -0.218 4.218 6 C -0.060 4.060 7 C -0.177 4.177 8 C 0.106 3.894 9 C -0.447 4.447 10 H 0.118 0.882 11 C -0.139 4.139 12 N -0.411 5.411 13 Si 0.744 3.256 14 H -0.198 1.198 15 H -0.216 1.216 16 H -0.166 1.166 17 C -0.309 4.309 18 C -0.019 4.019 19 H 0.092 0.908 20 H 0.102 0.898 21 H 0.107 0.893 22 H 0.132 0.868 23 H 0.137 0.863 24 H 0.101 0.899 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.891 4.929 1.288 5.858 hybrid contribution -0.910 -0.942 0.464 1.390 sum -3.801 3.987 1.752 5.781 Atomic orbital electron populations 1.21808 0.74468 1.04221 1.03400 1.46599 1.07321 1.03710 1.58418 1.77644 0.96653 1.12577 1.20852 1.74728 1.08357 1.12820 1.16661 1.19513 0.93452 0.90322 1.18479 1.19615 0.95618 0.91787 0.98933 1.20960 0.96952 0.93776 1.06026 1.17502 0.90408 0.93120 0.88407 1.19614 1.04875 0.91070 1.29133 0.88205 1.26281 0.95901 0.95161 0.96532 1.69681 1.21297 1.15674 1.34418 0.86161 0.79926 0.79866 0.79633 1.19783 1.21622 1.16621 1.19548 0.98516 0.87845 1.25026 1.19590 0.90121 0.90276 1.01914 0.90755 0.89780 0.89325 0.86786 0.86308 0.89881 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.57 11.41 59.85 0.68 2.25 15 2 N -0.36 -7.63 3.81 -65.53 -0.25 -7.88 15 3 N -0.10 -2.23 13.07 60.35 0.79 -1.44 15 4 N -0.25 -5.94 12.41 32.19 0.40 -5.54 15 5 C -0.09 -2.13 7.37 -84.78 -0.62 -2.76 15 6 C -0.04 -0.80 10.02 -39.69 -0.40 -1.20 15 7 C -0.16 -3.33 9.69 -39.32 -0.38 -3.71 15 8 C 0.11 2.65 5.11 -106.78 -0.55 2.11 15 9 C -0.42 -10.31 9.55 -37.83 -0.36 -10.67 15 10 H 0.10 2.51 8.06 -52.49 -0.42 2.09 15 11 C 0.08 2.01 5.40 -17.33 -0.09 1.91 15 12 N -0.79 -19.25 13.93 55.55 0.77 -18.47 15 13 Si 0.92 19.59 24.51 -169.99 -4.17 15.42 15 14 H -0.27 -5.55 6.71 56.52 0.38 -5.17 15 15 H -0.29 -5.92 7.11 56.52 0.40 -5.52 15 16 H -0.24 -5.48 6.87 56.52 0.39 -5.10 15 17 C -0.28 -6.72 7.16 -38.73 -0.28 -7.00 15 18 C 0.10 2.30 6.93 -84.21 -0.58 1.72 15 19 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 20 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 21 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.11 2.07 8.06 -52.48 -0.42 1.65 15 23 H 0.12 2.24 8.06 -52.48 -0.42 1.81 15 24 H 0.29 6.39 8.30 -40.82 -0.34 6.05 15 25 H 0.10 2.41 4.73 -52.49 -0.25 2.16 15 LS Contribution 222.68 15.07 3.36 3.36 Total: -1.00 -28.26 222.68 -3.64 -31.90 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -1.96 Total: 0.00 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -2.58 Total: -17.35 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 1.71 Total: -33.33 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.17 Total: 15.42 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -28.26 -3.64 -31.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214030670.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.894 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds