Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38968 * 125.53044 * 2 1 4 4 C 1.38862 * 107.66362 * 180.02562 * 3 2 1 5 5 N 1.34262 * 131.50832 * 180.02562 * 4 3 2 6 6 C 1.30753 * 121.48340 * 179.97438 * 5 4 3 7 7 C 1.46606 * 119.32400 * 359.97438 * 6 5 4 8 8 C 1.41333 * 120.90810 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00146 * 156.55396 * 8 7 6 10 10 C 1.39805 * 119.99725 * 336.54635 * 8 7 6 11 11 N 1.30930 * 120.00111 * 343.29084 * 10 8 7 12 12 Si 1.86804 * 119.99549 * 163.28363 * 10 8 7 13 13 H 1.48500 * 109.46851 * 90.00520 * 12 10 8 14 14 H 1.48499 * 109.46810 * 210.00107 * 12 10 8 15 15 H 1.48500 * 109.47340 * 330.00250 * 12 10 8 16 16 C 1.39614 * 118.18695 * 0.02562 * 7 6 5 17 17 N 1.36042 * 118.77114 * 0.02562 * 16 7 6 18 18 N 1.31208 * 125.52744 * 180.02562 * 2 1 3 19 19 H 1.09008 * 109.46689 * 90.00343 * 1 2 3 20 20 H 1.09004 * 109.47645 * 209.99640 * 1 2 3 21 21 H 1.08996 * 109.47812 * 330.00479 * 1 2 3 22 22 H 1.07998 * 126.16443 * 0.06461 * 3 2 1 23 23 H 1.07998 * 120.33460 * 179.72369 * 6 5 4 24 24 H 0.97006 * 119.99544 * 180.02562 * 11 10 8 25 25 H 1.07999 * 120.61904 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3145 1.1309 0.0000 4 6 3.6362 0.7049 -0.0006 5 7 4.7915 1.3888 -0.0004 6 6 5.9472 0.7772 -0.0006 7 6 5.9838 -0.6884 -0.0004 8 6 7.2142 -1.3839 -0.0012 9 1 7.2623 -2.3965 0.3710 10 6 8.3689 -0.7609 -0.4839 11 7 8.2718 0.3143 -1.2248 12 14 10.0504 -1.4624 -0.0716 13 1 10.4454 -2.4453 -1.1123 14 1 11.0476 -0.3629 -0.0253 15 1 9.9950 -2.1365 1.2504 16 6 4.7701 -1.3784 -0.0007 17 7 3.6115 -0.6654 -0.0015 18 7 2.2694 -1.0678 -0.0005 19 1 -0.3633 -0.0001 -1.0278 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 1.9753 2.1563 0.0010 23 1 6.8653 1.3459 -0.0049 24 1 9.0730 0.7463 -1.5600 25 1 4.7513 -2.4583 -0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214031086.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = 90.502354 kcal Electronic energy + Delta-G solvation = -12233.333756 eV Core-core repulsion = 10020.076788 eV Total energy + Delta-G solvation = -2213.256967 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.70564 -36.80342 -34.12416 -32.74975 -30.77809 -28.13277 -27.98442 -24.78387 -22.87169 -21.38758 -19.46670 -17.74400 -16.53888 -15.78765 -15.36126 -14.70335 -14.19431 -13.36796 -12.83069 -12.67728 -12.37241 -12.15923 -11.77579 -11.50134 -11.47367 -11.28680 -10.96185 -10.62149 -9.95778 -9.88224 -9.36203 -8.53006 -8.05094 -7.29343 -6.86112 -4.72513 2.00891 2.25949 2.86826 2.88667 2.94769 3.49419 3.58108 3.68106 4.25058 5.06039 5.17619 5.30684 5.81381 5.85525 6.00507 6.06896 6.29062 6.53383 6.61325 6.73387 6.82174 6.98456 7.43750 7.57229 7.69452 7.90073 8.17336 8.36910 8.76871 9.02044 9.72837 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.087456 B = 0.008335 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.083759 B = 3358.549222 C = 3607.223198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.063 3.937 3 C -0.301 4.301 4 C 0.212 3.788 5 N -0.488 5.488 6 C 0.186 3.814 7 C 0.036 3.964 8 C -0.429 4.429 9 H 0.093 0.907 10 C 0.073 3.927 11 N -0.791 5.791 12 Si 0.925 3.075 13 H -0.266 1.266 14 H -0.271 1.271 15 H -0.257 1.257 16 C -0.083 4.083 17 N -0.241 5.241 18 N -0.358 5.358 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.137 0.863 23 H 0.180 0.820 24 H 0.293 0.707 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 -0.031 1.428 1.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.090 4.090 3 C -0.334 4.334 4 C -0.020 4.020 5 N -0.199 5.199 6 C -0.003 4.003 7 C 0.029 3.971 8 C -0.459 4.459 9 H 0.111 0.889 10 C -0.147 4.147 11 N -0.416 5.416 12 Si 0.748 3.252 13 H -0.190 1.190 14 H -0.196 1.196 15 H -0.180 1.180 16 C -0.217 4.217 17 N -0.007 5.007 18 N -0.189 5.189 19 H 0.086 0.914 20 H 0.083 0.917 21 H 0.089 0.911 22 H 0.155 0.845 23 H 0.197 0.803 24 H 0.104 0.896 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.232 -0.250 1.285 1.798 hybrid contribution 0.977 -0.276 -0.002 1.015 sum -0.255 -0.527 1.283 1.410 Atomic orbital electron populations 1.20016 0.87548 1.02296 1.02044 1.21720 0.96107 0.90909 1.00266 1.20377 0.88356 0.98555 1.26075 1.20346 0.94348 0.81071 1.06233 1.67898 0.96922 1.37831 1.17222 1.25233 0.94303 0.92571 0.88200 1.19262 0.91983 0.92323 0.93557 1.19327 0.90467 1.01215 1.34880 0.88938 1.26050 1.02415 0.94258 0.91946 1.69715 1.33126 1.16682 1.22052 0.86004 0.79137 0.79576 0.80454 1.19038 1.19586 1.18042 1.21720 0.80571 0.96860 1.22566 1.46305 1.05517 1.06653 1.42273 1.77471 0.83989 1.21727 1.35684 0.91355 0.91657 0.91093 0.84523 0.80339 0.89593 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.43 36.00 0.38 -0.55 15 2 C 0.06 1.36 7.16 -82.59 -0.59 0.77 15 3 C -0.30 -6.94 10.84 -39.08 -0.42 -7.37 15 4 C 0.21 5.46 7.88 -155.37 -1.22 4.24 15 5 N -0.49 -12.45 10.43 -10.52 -0.11 -12.56 15 6 C 0.19 4.58 10.16 -14.64 -0.15 4.43 15 7 C 0.04 0.90 5.71 -104.83 -0.60 0.30 15 8 C -0.43 -9.99 9.09 -37.82 -0.34 -10.33 15 9 H 0.09 2.03 7.90 -52.49 -0.41 1.62 15 10 C 0.07 1.59 5.22 -17.35 -0.09 1.50 15 11 N -0.79 -17.77 10.87 55.54 0.60 -17.17 15 12 Si 0.93 16.19 29.59 -169.99 -5.03 11.16 15 13 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 14 H -0.27 -4.64 7.11 56.52 0.40 -4.23 15 15 H -0.26 -4.48 7.11 56.52 0.40 -4.08 15 16 C -0.08 -2.10 11.14 -15.17 -0.17 -2.26 15 17 N -0.24 -6.28 3.85 -11.29 -0.04 -6.32 15 18 N -0.36 -8.79 12.64 33.55 0.42 -8.37 15 19 H 0.07 0.94 8.14 -51.92 -0.42 0.52 15 20 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.14 2.79 8.06 -52.49 -0.42 2.37 15 23 H 0.18 4.20 6.25 -52.49 -0.33 3.87 15 24 H 0.29 5.89 8.30 -40.82 -0.34 5.55 15 25 H 0.15 3.39 8.06 -52.49 -0.42 2.96 15 LS Contribution 229.33 15.07 3.46 3.46 Total: -1.00 -27.84 229.33 -5.91 -33.75 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -1.99 Total: 5.33 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.21 Total: -9.28 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.87 Total: -44.42 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -5.03 Total: 11.16 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -27.84 -5.91 -33.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214031086.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.248 kcal (2) G-P(sol) polarization free energy of solvation -27.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds