Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38968 * 125.53044 * 2 1 4 4 C 1.38862 * 107.66362 * 180.02562 * 3 2 1 5 5 N 1.34262 * 131.50832 * 180.02562 * 4 3 2 6 6 C 1.30753 * 121.48340 * 179.97438 * 5 4 3 7 7 C 1.46606 * 119.32400 * 359.97438 * 6 5 4 8 8 C 1.41333 * 120.90810 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00146 * 156.55396 * 8 7 6 10 10 C 1.39805 * 119.99725 * 336.54635 * 8 7 6 11 11 N 1.30930 * 120.00111 * 343.29084 * 10 8 7 12 12 Si 1.86804 * 119.99549 * 163.28363 * 10 8 7 13 13 H 1.48500 * 109.46851 * 90.00520 * 12 10 8 14 14 H 1.48499 * 109.46810 * 210.00107 * 12 10 8 15 15 H 1.48500 * 109.47340 * 330.00250 * 12 10 8 16 16 C 1.39614 * 118.18695 * 0.02562 * 7 6 5 17 17 N 1.36042 * 118.77114 * 0.02562 * 16 7 6 18 18 N 1.31208 * 125.52744 * 180.02562 * 2 1 3 19 19 H 1.09008 * 109.46689 * 90.00343 * 1 2 3 20 20 H 1.09004 * 109.47645 * 209.99640 * 1 2 3 21 21 H 1.08996 * 109.47812 * 330.00479 * 1 2 3 22 22 H 1.07998 * 126.16443 * 0.06461 * 3 2 1 23 23 H 1.07998 * 120.33460 * 179.72369 * 6 5 4 24 24 H 0.97006 * 119.99544 * 180.02562 * 11 10 8 25 25 H 1.07999 * 120.61904 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3145 1.1309 0.0000 4 6 3.6362 0.7049 -0.0006 5 7 4.7915 1.3888 -0.0004 6 6 5.9472 0.7772 -0.0006 7 6 5.9838 -0.6884 -0.0004 8 6 7.2142 -1.3839 -0.0012 9 1 7.2623 -2.3965 0.3710 10 6 8.3689 -0.7609 -0.4839 11 7 8.2718 0.3143 -1.2248 12 14 10.0504 -1.4624 -0.0716 13 1 10.4454 -2.4453 -1.1123 14 1 11.0476 -0.3629 -0.0253 15 1 9.9950 -2.1365 1.2504 16 6 4.7701 -1.3784 -0.0007 17 7 3.6115 -0.6654 -0.0015 18 7 2.2694 -1.0678 -0.0005 19 1 -0.3633 -0.0001 -1.0278 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 1.9753 2.1563 0.0010 23 1 6.8653 1.3459 -0.0049 24 1 9.0730 0.7463 -1.5600 25 1 4.7513 -2.4583 -0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214031086.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = 74.335168 kcal Electronic energy + Delta-G solvation = -12234.034818 eV Core-core repulsion = 10020.076788 eV Total energy + Delta-G solvation = -2213.958029 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.52812 -38.61953 -35.89521 -34.55519 -32.47260 -29.96963 -29.55198 -26.51812 -24.75402 -23.20932 -21.20190 -19.54831 -18.34003 -17.61921 -17.05518 -16.53590 -15.89768 -15.01550 -14.36551 -14.21363 -13.92650 -13.73759 -13.40444 -13.20139 -13.02581 -12.87373 -12.73992 -12.04940 -11.67240 -11.62946 -11.05666 -10.43703 -9.90020 -9.00821 -8.69423 -6.54715 0.10970 0.45123 1.42807 1.47889 1.60117 1.74497 1.88153 2.17514 2.48094 3.19743 3.36785 3.64821 3.98425 4.38351 4.62225 4.70622 4.80092 4.86713 5.00472 5.04456 5.08637 5.23788 5.62177 5.74604 5.97661 6.10861 6.37186 6.56559 6.95499 7.10508 8.06090 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.087456 B = 0.008335 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.083759 B = 3358.549222 C = 3607.223198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.067 3.933 3 C -0.310 4.310 4 C 0.174 3.826 5 N -0.499 5.499 6 C 0.180 3.820 7 C 0.020 3.980 8 C -0.442 4.442 9 H 0.101 0.899 10 C 0.041 3.959 11 N -0.811 5.811 12 Si 1.001 2.999 13 H -0.261 1.261 14 H -0.260 1.260 15 H -0.255 1.255 16 C -0.118 4.118 17 N -0.256 5.256 18 N -0.384 5.384 19 H 0.089 0.911 20 H 0.076 0.924 21 H 0.099 0.901 22 H 0.160 0.840 23 H 0.187 0.813 24 H 0.306 0.694 25 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -0.036 1.497 1.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.342 4.342 4 C -0.057 4.057 5 N -0.209 5.209 6 C -0.010 4.010 7 C 0.012 3.988 8 C -0.471 4.471 9 H 0.119 0.881 10 C -0.178 4.178 11 N -0.435 5.435 12 Si 0.820 3.180 13 H -0.186 1.186 14 H -0.184 1.184 15 H -0.178 1.178 16 C -0.251 4.251 17 N -0.022 5.022 18 N -0.215 5.215 19 H 0.107 0.893 20 H 0.095 0.905 21 H 0.118 0.882 22 H 0.178 0.822 23 H 0.203 0.797 24 H 0.118 0.882 25 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.827 -0.248 1.347 1.600 hybrid contribution 0.865 -0.231 -0.070 0.898 sum 0.037 -0.479 1.277 1.365 Atomic orbital electron populations 1.20254 0.82988 1.04305 1.03979 1.22692 0.98710 0.89483 0.97730 1.20847 0.87569 1.00160 1.25590 1.20896 0.95366 0.81544 1.07884 1.67877 0.97253 1.38204 1.17611 1.25381 0.94426 0.92831 0.88320 1.19542 0.92675 0.92575 0.93965 1.19705 0.90764 1.01843 1.34756 0.88061 1.26966 1.05675 0.94220 0.90933 1.69722 1.35082 1.17167 1.21544 0.84881 0.73982 0.78999 0.80106 1.18587 1.18431 1.17804 1.21875 0.80918 0.97264 1.25088 1.46467 1.06043 1.06794 1.42904 1.77423 0.83869 1.23454 1.36756 0.89271 0.90534 0.88218 0.82209 0.79669 0.88249 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.43 71.23 0.74 -0.84 15 2 C 0.07 2.82 7.16 42.82 0.31 3.12 15 3 C -0.31 -14.10 10.84 22.59 0.24 -13.85 15 4 C 0.17 9.14 7.88 133.08 1.05 10.19 15 5 N -0.50 -25.97 10.43 -187.21 -1.95 -27.92 15 6 C 0.18 9.06 10.16 87.04 0.88 9.94 15 7 C 0.02 1.02 5.71 -20.00 -0.11 0.91 15 8 C -0.44 -20.58 9.09 23.41 0.21 -20.36 15 9 H 0.10 4.42 7.90 -2.91 -0.02 4.40 15 10 C 0.04 1.72 5.22 85.21 0.45 2.16 15 11 N -0.81 -35.72 10.87 21.80 0.24 -35.49 15 12 Si 1.00 31.51 29.59 68.60 2.03 33.54 15 13 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 14 H -0.26 -7.72 7.11 99.48 0.71 -7.01 15 15 H -0.25 -7.91 7.11 99.48 0.71 -7.20 15 16 C -0.12 -6.16 11.14 84.37 0.94 -5.21 15 17 N -0.26 -13.63 3.85 -189.64 -0.73 -14.36 15 18 N -0.38 -18.94 12.64 -47.77 -0.60 -19.54 15 19 H 0.09 2.15 8.14 -2.38 -0.02 2.14 15 20 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.16 6.29 8.06 -2.91 -0.02 6.26 15 23 H 0.19 8.84 6.25 -2.91 -0.02 8.82 15 24 H 0.31 11.84 8.30 -92.70 -0.77 11.07 15 25 H 0.15 7.32 8.06 -2.91 -0.02 7.30 15 Total: -1.00 -60.05 229.33 4.90 -55.15 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 1.21 Total: 22.56 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.71 Total: -13.94 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -3.05 Total: -97.30 kcal Atomic # 14 Polarization: 31.51 SS G_CDS: 2.03 Total: 33.54 kcal Total: -60.05 4.90 -55.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214031086.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.486 kcal (2) G-P(sol) polarization free energy of solvation -60.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds