Wall clock time and date at job start Mon Mar 30 2020 02:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86804 * 120.00280 * 2 1 4 4 H 1.48501 * 109.47020 * 85.17929 * 3 2 1 5 5 H 1.48496 * 109.47035 * 205.18026 * 3 2 1 6 6 H 1.48499 * 109.46979 * 325.17821 * 3 2 1 7 7 C 1.39952 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00406 * 196.54174 * 7 2 1 9 9 C 1.41410 * 119.99396 * 16.53613 * 7 2 1 10 10 C 1.40633 * 120.58752 * 25.38859 * 9 7 2 11 11 N 1.31467 * 120.18652 * 180.16139 * 10 9 7 12 12 C 1.31875 * 121.92921 * 0.08579 * 11 10 9 13 13 C 1.39175 * 121.61677 * 359.87139 * 12 11 10 14 14 C 1.37266 * 119.08379 * 359.62604 * 13 12 11 15 15 C 1.50300 * 122.95302 * 180.40222 * 14 13 12 16 16 C 1.52833 * 110.54186 * 342.78039 * 15 14 13 17 17 C 1.53325 * 108.41642 * 50.55013 * 16 15 14 18 18 C 1.50512 * 118.42319 * 179.68685 * 13 12 11 19 19 H 0.97005 * 119.99868 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.90545 * 0.14574 * 10 9 7 21 21 H 1.08000 * 119.19582 * 179.83724 * 12 11 10 22 22 H 1.08995 * 109.44516 * 222.34153 * 15 14 13 23 23 H 1.09008 * 109.09718 * 102.99868 * 15 14 13 24 24 H 1.08997 * 109.67328 * 290.81888 * 16 15 14 25 25 H 1.08992 * 109.67894 * 170.28138 * 16 15 14 26 26 H 1.08997 * 109.62560 * 170.68835 * 17 16 15 27 27 H 1.09003 * 109.62717 * 50.10605 * 17 16 15 28 28 H 1.09004 * 109.26359 * 282.57096 * 18 13 12 29 29 H 1.09002 * 109.26509 * 42.02849 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3879 2.1052 1.3951 5 1 3.5870 1.4128 -0.5957 6 1 1.4944 2.6211 -0.7995 7 6 2.0080 -1.2120 0.0005 8 1 3.0544 -1.2313 0.2668 9 6 1.3447 -2.4114 -0.3475 10 6 0.2094 -2.3866 -1.1771 11 7 -0.4030 -3.5061 -1.4932 12 6 0.0131 -4.6772 -1.0521 13 6 1.1284 -4.7920 -0.2276 14 6 1.8150 -3.6578 0.1278 15 6 3.0347 -3.6818 1.0057 16 6 3.1284 -5.0093 1.7574 17 6 2.9774 -6.1509 0.7451 18 6 1.5357 -6.1636 0.2398 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1605 -1.4451 -1.5555 21 1 -0.5251 -5.5691 -1.3373 22 1 2.9808 -2.8640 1.7242 23 1 3.9226 -3.5551 0.3862 24 1 2.3315 -5.0683 2.4986 25 1 4.0967 -5.0833 2.2522 26 1 3.2045 -7.1011 1.2283 27 1 3.6573 -5.9905 -0.0917 28 1 0.8745 -6.4796 1.0466 29 1 1.4513 -6.8659 -0.5896 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214038626.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:36 Heat of formation + Delta-G solvation = -4.290904 kcal Electronic energy + Delta-G solvation = -12853.643433 eV Core-core repulsion = 10739.816265 eV Total energy + Delta-G solvation = -2113.827168 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.99287 -35.72945 -34.05862 -31.36751 -29.90837 -28.23057 -25.45020 -23.03129 -22.00176 -20.85041 -18.67418 -17.05680 -15.76005 -14.87784 -14.72537 -14.20187 -13.42393 -13.15680 -13.01249 -12.44519 -12.11299 -11.60086 -11.46793 -11.18019 -11.07707 -11.01535 -10.64317 -10.48353 -10.32504 -10.10250 -9.49106 -9.33239 -7.91686 -7.71534 -7.34912 -6.87530 -4.45156 2.68980 2.88574 3.03319 3.07584 3.18542 3.86431 4.62406 5.41096 5.43543 5.45396 5.62592 5.99557 6.07050 6.17269 6.21563 6.25548 6.34610 6.41990 6.54790 6.64354 6.73757 6.90104 6.95852 7.15124 7.16245 7.39243 7.72365 7.87958 8.13000 8.34871 8.73504 8.78709 9.81425 10.09489 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.040493 B = 0.011793 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.307328 B = 2373.627606 C = 2952.772768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.274 1.274 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.065 3.935 10 C 0.033 3.967 11 N -0.479 5.479 12 C -0.045 4.045 13 C -0.102 4.102 14 C -0.157 4.157 15 C -0.054 4.054 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.068 4.068 19 H 0.284 0.716 20 H 0.148 0.852 21 H 0.114 0.886 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -3.965 2.202 6.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.183 1.183 6 H -0.199 1.199 7 C -0.479 4.479 8 H 0.100 0.900 9 C 0.061 3.939 10 C -0.130 4.130 11 N -0.187 5.187 12 C -0.200 4.200 13 C -0.105 4.105 14 C -0.164 4.164 15 C -0.091 4.091 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.106 4.106 19 H 0.095 0.905 20 H 0.165 0.835 21 H 0.132 0.868 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.951 -3.807 1.677 5.737 hybrid contribution 0.950 0.791 0.597 1.373 sum 4.902 -3.016 2.274 6.188 Atomic orbital electron populations 1.69785 1.07648 1.29656 1.34341 1.25978 0.94773 1.01530 0.92136 0.86255 0.80709 0.80450 0.79126 1.19492 1.18335 1.19876 1.19519 0.97685 0.90645 1.40009 0.90006 1.18517 0.92968 0.92197 0.90236 1.22898 0.96422 0.94760 0.98893 1.67053 1.30568 0.98928 1.22102 1.21712 0.98566 0.94741 1.04965 1.19901 0.97165 0.93862 0.99527 1.19551 1.00230 0.92834 1.03805 1.20020 0.95697 0.96238 0.97145 1.21554 1.00437 0.95697 0.97741 1.21496 0.97070 0.97737 0.98894 1.20252 0.95835 0.94831 0.99654 0.90502 0.83522 0.86802 0.91375 0.92859 0.92329 0.92799 0.92789 0.92179 0.92065 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.24 10.97 55.55 0.61 -19.63 15 2 C 0.07 1.83 5.17 -17.34 -0.09 1.74 15 3 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 15 4 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 5 H -0.26 -5.14 7.11 56.52 0.40 -4.73 15 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.45 -11.55 8.17 -37.73 -0.31 -11.86 15 8 H 0.08 2.00 7.03 -52.49 -0.37 1.63 15 9 C 0.07 1.74 5.58 -106.57 -0.60 1.15 15 10 C 0.03 0.92 9.88 -16.80 -0.17 0.75 15 11 N -0.48 -12.84 10.33 -12.47 -0.13 -12.97 15 12 C -0.04 -1.08 10.79 -17.19 -0.19 -1.27 15 13 C -0.10 -2.33 5.73 -104.72 -0.60 -2.93 15 14 C -0.16 -3.78 5.79 -103.95 -0.60 -4.38 15 15 C -0.05 -1.10 4.78 -28.16 -0.13 -1.23 15 16 C -0.12 -1.95 5.99 -26.65 -0.16 -2.11 15 17 C -0.11 -1.81 5.97 -26.68 -0.16 -1.97 15 18 C -0.07 -1.21 5.71 -28.09 -0.16 -1.37 15 19 H 0.28 6.59 8.30 -40.82 -0.34 6.26 15 20 H 0.15 4.13 6.20 -52.49 -0.33 3.80 15 21 H 0.11 2.44 8.05 -52.49 -0.42 2.02 15 22 H 0.07 1.42 7.33 -51.93 -0.38 1.04 15 23 H 0.05 1.04 8.14 -51.92 -0.42 0.62 15 24 H 0.06 0.99 8.10 -51.93 -0.42 0.57 15 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.06 0.96 8.10 -51.93 -0.42 0.54 15 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 29 H 0.06 0.98 8.13 -51.93 -0.42 0.56 15 LS Contribution 239.59 15.07 3.61 3.61 Total: -1.00 -27.95 239.59 -7.69 -35.63 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.59 Total: 3.68 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -3.16 Total: -23.48 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.48 Total: -32.60 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.95 -7.69 -35.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214038626.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.342 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds