Wall clock time and date at job start Mon Mar 30 2020 02:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47046 * 240.00516 * 3 2 1 5 5 H 1.48493 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46929 * 120.00225 * 3 2 1 7 7 C 1.37878 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00263 * 185.26471 * 7 2 1 9 9 C 1.50700 * 119.99865 * 5.26514 * 7 2 1 10 10 H 1.09004 * 110.26804 * 332.98839 * 9 7 2 11 11 C 1.54337 * 110.30544 * 95.06262 * 9 7 2 12 12 C 1.54336 * 102.40170 * 145.40137 * 11 9 7 13 13 C 1.51381 * 105.17361 * 333.62695 * 12 11 9 14 14 C 1.38374 * 130.32179 * 197.19878 * 13 12 11 15 15 C 1.38778 * 120.15609 * 179.97438 * 14 13 12 16 16 N 1.39675 * 120.10918 * 180.02562 * 15 14 13 17 17 C 1.38922 * 119.77554 * 0.02965 * 15 14 13 18 18 C 1.37964 * 119.85914 * 359.97438 * 17 15 14 19 19 C 1.38286 * 109.75459 * 17.46841 * 13 12 11 20 20 H 0.97002 * 119.99912 * 359.97438 * 1 2 3 21 21 H 1.09002 * 110.81606 * 27.17443 * 11 9 7 22 22 H 1.09001 * 110.98897 * 263.71427 * 11 9 7 23 23 H 1.08995 * 110.30265 * 214.70000 * 12 11 9 24 24 H 1.09003 * 110.30249 * 92.55022 * 12 11 9 25 25 H 1.08002 * 119.92021 * 359.97438 * 14 13 12 26 26 H 0.96997 * 119.99718 * 179.97438 * 16 15 14 27 27 H 0.96993 * 120.00652 * 359.97438 * 16 15 14 28 28 H 1.08006 * 120.07326 * 179.97438 * 17 15 14 29 29 H 1.08005 * 119.84046 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0810 -1.1961 0.0853 9 6 1.2557 -2.4963 -0.1209 10 1 0.2439 -2.3877 0.2698 11 6 1.2146 -2.9564 -1.5935 12 6 1.2914 -4.4923 -1.4632 13 6 2.0089 -4.7435 -0.1542 14 6 2.6294 -5.8850 0.3221 15 6 3.2318 -5.8810 1.5724 16 7 3.8583 -7.0335 2.0519 17 6 3.2095 -4.7268 2.3452 18 6 2.5896 -3.5912 1.8661 19 6 1.9833 -3.5981 0.6202 20 1 -0.4850 0.8401 0.0004 21 1 2.0728 -2.5708 -2.1439 22 1 0.2826 -2.6541 -2.0711 23 1 1.8589 -4.9143 -2.2926 24 1 0.2892 -4.9199 -1.4333 25 1 2.6449 -6.7811 -0.2805 26 1 4.2792 -7.0288 2.9258 27 1 3.8726 -7.8386 1.5112 28 1 3.6765 -4.7185 3.3191 29 1 2.5728 -2.6939 2.4671 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217505114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:13 Heat of formation + Delta-G solvation = 11.435961 kcal Electronic energy + Delta-G solvation = -12577.536204 eV Core-core repulsion = 10464.391004 eV Total energy + Delta-G solvation = -2113.145200 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.19259 -35.93803 -32.81763 -32.16005 -29.97117 -27.29910 -26.47856 -23.55232 -21.80848 -19.91493 -19.44504 -16.56062 -16.11143 -15.93194 -14.84936 -14.14640 -13.82422 -13.72874 -12.66635 -12.43153 -12.30891 -11.93266 -11.53345 -10.99704 -10.80636 -10.51285 -10.45524 -10.27640 -9.98464 -9.58831 -9.03772 -8.87740 -8.41290 -7.96874 -6.70864 -5.96290 -3.99406 2.18084 2.46327 3.35038 3.39556 3.42903 4.26661 4.46502 4.69337 5.29179 5.44271 5.65563 5.84626 6.05842 6.15816 6.23884 6.33293 6.47024 6.72013 6.80558 6.93924 7.04317 7.19474 7.28868 7.56402 7.61644 7.80169 7.88307 7.97945 8.09507 8.14404 8.50187 9.07883 9.63098 11.11248 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.045500 B = 0.009673 C = 0.008493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.235286 B = 2894.009903 C = 3296.146866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.055 0.945 9 C 0.070 3.930 10 H 0.070 0.930 11 C -0.108 4.108 12 C -0.082 4.082 13 C -0.072 4.072 14 C -0.190 4.190 15 C 0.185 3.815 16 N -0.890 5.890 17 C -0.202 4.202 18 C -0.060 4.060 19 C -0.097 4.097 20 H 0.261 0.739 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.391 0.609 27 H 0.390 0.610 28 H 0.108 0.892 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -9.958 1.542 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.052 3.948 10 H 0.088 0.912 11 C -0.146 4.146 12 C -0.119 4.119 13 C -0.073 4.073 14 C -0.212 4.212 15 C 0.083 3.917 16 N -0.431 5.431 17 C -0.225 4.225 18 C -0.079 4.079 19 C -0.099 4.099 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.122 0.878 26 H 0.218 0.782 27 H 0.217 0.783 28 H 0.127 0.873 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.194 -9.757 1.514 10.728 hybrid contribution 0.711 0.548 0.180 0.916 sum 4.905 -9.209 1.694 10.571 Atomic orbital electron populations 1.69911 1.05943 1.26704 1.50781 1.24990 0.94812 0.99098 0.94833 0.86700 0.79644 0.83230 0.78690 1.20227 1.21375 1.20257 1.21013 0.93148 0.90041 1.49975 0.92715 1.18449 0.96953 0.90386 0.89035 0.91212 1.22463 1.00613 0.90942 1.00609 1.21120 0.98338 0.99122 0.93352 1.20497 0.96669 0.93203 0.96886 1.19836 1.07044 0.98399 0.95963 1.17449 0.94112 0.87093 0.92999 1.42253 1.66203 1.12142 1.22494 1.20392 1.08558 0.93142 1.00363 1.20455 0.95284 0.96664 0.95490 1.21228 0.98383 0.96366 0.93905 0.92886 0.92332 0.92434 0.92590 0.91567 0.87804 0.78204 0.78318 0.87347 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 12.82 55.43 0.71 -25.27 15 2 C 0.06 1.79 5.45 -17.82 -0.10 1.69 15 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.50 -13.94 8.08 -34.44 -0.28 -14.21 15 8 H 0.05 1.52 7.82 -52.49 -0.41 1.11 15 9 C 0.07 1.79 2.93 -91.88 -0.27 1.52 15 10 H 0.07 1.97 7.35 -51.93 -0.38 1.59 15 11 C -0.11 -2.45 6.58 -25.33 -0.17 -2.61 15 12 C -0.08 -1.59 6.77 -26.85 -0.18 -1.77 15 13 C -0.07 -1.48 6.13 -104.22 -0.64 -2.12 15 14 C -0.19 -3.44 9.89 -39.33 -0.39 -3.83 15 15 C 0.18 3.14 6.75 -83.83 -0.57 2.57 15 16 N -0.89 -11.10 9.09 32.39 0.29 -10.81 15 17 C -0.20 -3.67 9.90 -39.43 -0.39 -4.06 15 18 C -0.06 -1.28 9.76 -39.56 -0.39 -1.67 15 19 C -0.10 -2.24 5.62 -104.14 -0.58 -2.82 15 20 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.06 1.34 7.91 -51.93 -0.41 0.93 15 22 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 25 H 0.10 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.39 4.06 8.84 -40.82 -0.36 3.70 15 27 H 0.39 4.05 8.84 -40.82 -0.36 3.69 15 28 H 0.11 1.68 8.06 -52.48 -0.42 1.26 15 29 H 0.12 2.53 8.06 -52.48 -0.42 2.10 15 LS Contribution 248.30 15.07 3.74 3.74 Total: -1.00 -29.65 248.30 -7.82 -37.47 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.60 Total: 5.79 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -3.95 Total: -27.31 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 1.01 Total: -36.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.65 -7.82 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217505114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.905 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds