Wall clock time and date at job start Mon Mar 30 2020 02:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47046 * 240.00516 * 3 2 1 5 5 H 1.48493 * 109.46974 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46929 * 120.00225 * 3 2 1 7 7 C 1.37878 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00263 * 185.26471 * 7 2 1 9 9 C 1.50700 * 119.99865 * 5.26514 * 7 2 1 10 10 H 1.09004 * 110.26804 * 332.98839 * 9 7 2 11 11 C 1.54337 * 110.30544 * 95.06262 * 9 7 2 12 12 C 1.54336 * 102.40170 * 145.40137 * 11 9 7 13 13 C 1.51381 * 105.17361 * 333.62695 * 12 11 9 14 14 C 1.38374 * 130.32179 * 197.19878 * 13 12 11 15 15 C 1.38778 * 120.15609 * 179.97438 * 14 13 12 16 16 N 1.39675 * 120.10918 * 180.02562 * 15 14 13 17 17 C 1.38922 * 119.77554 * 0.02965 * 15 14 13 18 18 C 1.37964 * 119.85914 * 359.97438 * 17 15 14 19 19 C 1.38286 * 109.75459 * 17.46841 * 13 12 11 20 20 H 0.97002 * 119.99912 * 359.97438 * 1 2 3 21 21 H 1.09002 * 110.81606 * 27.17443 * 11 9 7 22 22 H 1.09001 * 110.98897 * 263.71427 * 11 9 7 23 23 H 1.08995 * 110.30265 * 214.70000 * 12 11 9 24 24 H 1.09003 * 110.30249 * 92.55022 * 12 11 9 25 25 H 1.08002 * 119.92021 * 359.97438 * 14 13 12 26 26 H 0.96997 * 119.99718 * 179.97438 * 16 15 14 27 27 H 0.96993 * 120.00652 * 359.97438 * 16 15 14 28 28 H 1.08006 * 120.07326 * 179.97438 * 17 15 14 29 29 H 1.08005 * 119.84046 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0810 -1.1961 0.0853 9 6 1.2557 -2.4963 -0.1209 10 1 0.2439 -2.3877 0.2698 11 6 1.2146 -2.9564 -1.5935 12 6 1.2914 -4.4923 -1.4632 13 6 2.0089 -4.7435 -0.1542 14 6 2.6294 -5.8850 0.3221 15 6 3.2318 -5.8810 1.5724 16 7 3.8583 -7.0335 2.0519 17 6 3.2095 -4.7268 2.3452 18 6 2.5896 -3.5912 1.8661 19 6 1.9833 -3.5981 0.6202 20 1 -0.4850 0.8401 0.0004 21 1 2.0728 -2.5708 -2.1439 22 1 0.2826 -2.6541 -2.0711 23 1 1.8589 -4.9143 -2.2926 24 1 0.2892 -4.9199 -1.4333 25 1 2.6449 -6.7811 -0.2805 26 1 4.2792 -7.0288 2.9258 27 1 3.8726 -7.8386 1.5112 28 1 3.6765 -4.7185 3.3191 29 1 2.5728 -2.6939 2.4671 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217505114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:13 Heat of formation + Delta-G solvation = -6.768225 kcal Electronic energy + Delta-G solvation = -12578.325597 eV Core-core repulsion = 10464.391004 eV Total energy + Delta-G solvation = -2113.934593 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.73708 -37.46069 -34.69658 -33.72044 -31.61855 -28.96015 -28.12724 -25.47214 -23.35402 -21.37879 -21.23080 -18.49418 -17.52596 -17.33084 -16.63305 -15.89815 -15.46277 -15.24299 -14.23602 -13.99894 -13.84287 -13.67801 -13.36160 -12.90633 -12.50452 -12.35717 -12.28735 -11.94957 -11.57618 -11.34612 -10.91537 -10.70951 -10.47712 -9.45570 -8.24397 -7.96070 -6.18835 0.67892 0.93665 1.41196 1.42864 1.50919 2.44503 3.12454 3.15740 3.18320 3.92740 4.15508 4.34031 4.52874 4.56482 4.75450 4.78532 4.98432 5.10278 5.25094 5.28365 5.42672 5.51189 5.63222 5.66932 5.85610 5.94458 6.16005 6.22988 6.44333 6.78402 6.94079 7.18697 7.46261 8.98074 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.045500 B = 0.009673 C = 0.008493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.235286 B = 2894.009903 C = 3296.146866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.045 0.955 9 C 0.064 3.936 10 H 0.026 0.974 11 C -0.106 4.106 12 C -0.072 4.072 13 C -0.076 4.076 14 C -0.192 4.192 15 C 0.201 3.799 16 N -0.868 5.868 17 C -0.205 4.205 18 C -0.078 4.078 19 C -0.144 4.144 20 H 0.262 0.738 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.405 0.595 27 H 0.405 0.595 28 H 0.136 0.864 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -12.048 1.649 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.045 3.955 10 H 0.044 0.956 11 C -0.144 4.144 12 C -0.109 4.109 13 C -0.077 4.077 14 C -0.215 4.215 15 C 0.097 3.903 16 N -0.410 5.410 17 C -0.227 4.227 18 C -0.097 4.097 19 C -0.146 4.146 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.155 0.845 26 H 0.235 0.765 27 H 0.235 0.765 28 H 0.154 0.846 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.873 -11.895 1.636 13.366 hybrid contribution 0.251 1.069 0.224 1.120 sum 6.123 -10.826 1.860 12.576 Atomic orbital electron populations 1.70047 1.07366 1.27414 1.52080 1.25756 0.95611 1.02456 0.94699 0.85695 0.78459 0.79102 0.78939 1.19485 1.20839 1.19659 1.21287 0.92851 0.91637 1.49538 0.93625 1.18345 0.94829 0.91100 0.91201 0.95557 1.22292 0.99664 0.94050 0.98404 1.21037 0.99645 0.96165 0.94043 1.20648 0.96955 0.93275 0.96785 1.20120 1.06157 0.98544 0.96669 1.17529 0.92641 0.87858 0.92298 1.42188 1.64481 1.11131 1.23212 1.20584 1.08020 0.92470 1.01628 1.20481 0.96514 0.97545 0.95131 1.21071 1.01235 0.96780 0.95545 0.92917 0.93152 0.93386 0.89653 0.90153 0.84537 0.76549 0.76511 0.84616 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 12.82 21.45 0.27 -55.91 15 2 C 0.01 0.73 5.45 84.66 0.46 1.19 15 3 Si 0.95 44.96 29.54 68.60 2.03 46.98 15 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 15 7 C -0.52 -29.71 8.08 25.60 0.21 -29.50 15 8 H 0.05 2.64 7.82 -2.91 -0.02 2.62 15 9 C 0.06 3.41 2.93 -11.61 -0.03 3.38 15 10 H 0.03 1.60 7.35 -2.38 -0.02 1.58 15 11 C -0.11 -4.92 6.58 31.50 0.21 -4.71 15 12 C -0.07 -2.69 6.77 30.52 0.21 -2.48 15 13 C -0.08 -3.03 6.13 -19.60 -0.12 -3.15 15 14 C -0.19 -6.30 9.89 22.43 0.22 -6.08 15 15 C 0.20 6.11 6.75 38.18 0.26 6.36 15 16 N -0.87 -17.42 9.09 -51.44 -0.47 -17.89 15 17 C -0.20 -7.02 9.90 22.37 0.22 -6.80 15 18 C -0.08 -3.37 9.76 22.28 0.22 -3.15 15 19 C -0.14 -6.79 5.62 -19.55 -0.11 -6.90 15 20 H 0.26 14.99 8.31 -92.71 -0.77 14.22 15 21 H 0.05 2.35 7.91 -2.39 -0.02 2.34 15 22 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 25 H 0.14 3.56 8.06 -2.91 -0.02 3.54 15 26 H 0.41 6.40 8.84 -92.71 -0.82 5.58 15 27 H 0.41 6.22 8.84 -92.71 -0.82 5.40 15 28 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 29 H 0.10 4.52 8.06 -2.91 -0.02 4.50 15 Total: -1.00 -66.24 248.30 3.09 -63.15 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -0.48 Total: 15.50 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 1.74 Total: -51.84 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -0.19 Total: -73.79 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.24 3.09 -63.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217505114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.378 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds