Wall clock time and date at job start Mon Mar 30 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99917 * 2 1 4 4 H 1.48501 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47427 * 300.00064 * 3 2 1 6 6 H 1.48506 * 109.47168 * 60.00199 * 3 2 1 7 7 C 1.37881 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00381 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99764 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.34423 * 299.32866 * 9 7 2 11 11 C 1.54348 * 110.32460 * 177.21326 * 9 7 2 12 12 C 1.54348 * 102.39508 * 267.46466 * 11 9 7 13 13 C 1.51387 * 105.16542 * 333.60491 * 12 11 9 14 14 C 1.38370 * 130.31962 * 197.21020 * 13 12 11 15 15 C 1.38775 * 120.16043 * 180.02562 * 14 13 12 16 16 N 1.39676 * 120.11187 * 179.97438 * 15 14 13 17 17 C 1.38922 * 119.77465 * 359.97438 * 15 14 13 18 18 C 1.37970 * 119.85852 * 359.97438 * 17 15 14 19 19 C 1.38288 * 109.75644 * 17.20926 * 13 12 11 20 20 H 0.97003 * 120.00145 * 0.02562 * 1 2 3 21 21 H 1.08999 * 110.83732 * 149.23444 * 11 9 7 22 22 H 1.09005 * 110.98210 * 25.75836 * 11 9 7 23 23 H 1.08999 * 110.30600 * 214.68215 * 12 11 9 24 24 H 1.09002 * 110.30354 * 92.52425 * 12 11 9 25 25 H 1.08007 * 119.91681 * 0.28223 * 14 13 12 26 26 H 0.96995 * 120.00302 * 0.02562 * 16 15 14 27 27 H 0.97003 * 119.99611 * 179.97438 * 16 15 14 28 28 H 1.08001 * 120.07526 * 179.97438 * 17 15 14 29 29 H 1.08000 * 119.84102 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6276 -2.5768 0.8914 11 6 2.2349 -3.6863 -0.0692 12 6 2.3320 -3.9474 -1.5873 13 6 1.0227 -3.4475 -2.1597 14 6 0.4245 -3.7015 -3.3813 15 6 -0.7975 -3.1225 -3.6931 16 7 -1.4001 -3.3791 -4.9267 17 6 -1.4194 -2.2867 -2.7740 18 6 -0.8196 -2.0372 -1.5568 19 6 0.4011 -2.6151 -1.2470 20 1 -0.4850 0.8401 -0.0004 21 1 1.8304 -4.5561 0.4484 22 1 3.2074 -3.4118 0.3396 23 1 2.4468 -5.0139 -1.7811 24 1 3.1676 -3.3925 -2.0139 25 1 0.9079 -4.3553 -4.0922 26 1 -0.9647 -3.9632 -5.5670 27 1 -2.2545 -2.9738 -5.1427 28 1 -2.3703 -1.8331 -3.0118 29 1 -1.3031 -1.3870 -0.8427 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217505196.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:14 Heat of formation + Delta-G solvation = 17.082155 kcal Electronic energy + Delta-G solvation = -12871.485422 eV Core-core repulsion = 10758.585059 eV Total energy + Delta-G solvation = -2112.900363 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.94698 -35.81390 -32.56603 -32.16273 -29.58113 -26.99306 -26.46012 -23.71484 -21.46052 -19.69770 -19.36591 -16.50927 -16.11823 -15.56009 -14.46848 -14.20234 -13.80054 -13.48656 -12.39164 -12.22511 -12.08244 -12.01819 -11.22044 -10.94751 -10.77354 -10.57197 -10.32784 -10.19154 -9.75227 -9.39293 -9.20499 -8.76743 -8.39945 -7.59999 -6.43307 -5.90198 -4.02856 2.55884 2.83676 3.31710 3.39531 3.43018 4.45128 4.51726 5.07013 5.32926 5.63917 5.92123 5.97682 6.12146 6.29987 6.43076 6.62957 6.69867 6.80981 6.93813 7.06586 7.15577 7.35713 7.42890 7.65457 7.82301 7.95757 8.03890 8.29458 8.37989 8.41802 8.44396 8.99759 9.60546 11.06986 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.012887 C = 0.010560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.791990 B = 2172.278907 C = 2650.892462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.079 3.921 10 H 0.031 0.969 11 C -0.116 4.116 12 C -0.068 4.068 13 C -0.080 4.080 14 C -0.201 4.201 15 C 0.180 3.820 16 N -0.893 5.893 17 C -0.215 4.215 18 C -0.036 4.036 19 C -0.076 4.076 20 H 0.259 0.741 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.387 0.613 27 H 0.389 0.611 28 H 0.101 0.899 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -5.438 -5.303 7.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.060 3.940 10 H 0.049 0.951 11 C -0.154 4.154 12 C -0.105 4.105 13 C -0.081 4.081 14 C -0.223 4.223 15 C 0.079 3.921 16 N -0.434 5.434 17 C -0.237 4.237 18 C -0.054 4.054 19 C -0.078 4.078 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.213 0.787 27 H 0.215 0.785 28 H 0.119 0.881 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.166 -5.288 -5.212 7.516 hybrid contribution 0.240 1.038 -0.682 1.265 sum -0.926 -4.250 -5.895 7.326 Atomic orbital electron populations 1.69814 1.05877 1.26025 1.50370 1.24959 0.94859 0.99047 0.95017 0.86540 0.80156 0.83866 0.77472 1.19839 1.21147 1.21044 1.21162 0.92710 0.89950 1.49969 0.92322 1.18283 0.91424 0.92446 0.91824 0.95087 1.22357 1.00479 0.98553 0.94011 1.20884 0.94740 0.98424 0.96440 1.20376 0.96062 0.98015 0.93630 1.19664 0.96752 1.07824 0.98084 1.17471 0.92621 0.95901 0.86102 1.42234 1.26035 1.58030 1.17109 1.20513 1.01597 1.05292 0.96303 1.21176 0.94404 0.94602 0.95264 1.20844 0.93683 0.94767 0.98553 0.93108 0.93518 0.91879 0.93097 0.91353 0.88459 0.78664 0.78466 0.88058 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 9.66 55.43 0.54 -24.03 15 2 C 0.06 1.72 5.32 -17.82 -0.09 1.62 15 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 15 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.50 -13.72 8.53 -34.44 -0.29 -14.01 15 8 H 0.06 1.59 7.58 -52.49 -0.40 1.19 15 9 C 0.08 2.00 2.82 -91.88 -0.26 1.74 15 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 11 C -0.12 -2.46 6.58 -25.32 -0.17 -2.63 15 12 C -0.07 -1.36 6.76 -26.84 -0.18 -1.55 15 13 C -0.08 -1.80 6.13 -104.22 -0.64 -2.44 15 14 C -0.20 -4.10 9.89 -39.33 -0.39 -4.49 15 15 C 0.18 3.53 6.75 -83.83 -0.57 2.96 15 16 N -0.89 -13.24 9.09 32.39 0.29 -12.95 15 17 C -0.21 -4.58 9.90 -39.43 -0.39 -4.97 15 18 C -0.04 -0.87 8.78 -39.56 -0.35 -1.22 15 19 C -0.08 -1.90 5.13 -104.14 -0.53 -2.44 15 20 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 21 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.06 1.28 7.75 -51.93 -0.40 0.88 15 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.10 1.74 8.06 -52.48 -0.42 1.32 15 26 H 0.39 4.85 8.84 -40.82 -0.36 4.49 15 27 H 0.39 4.96 8.84 -40.82 -0.36 4.60 15 28 H 0.10 1.93 8.06 -52.49 -0.42 1.50 15 29 H 0.15 3.82 6.00 -52.49 -0.32 3.51 15 LS Contribution 242.21 15.07 3.65 3.65 Total: -1.00 -29.07 242.21 -7.91 -36.98 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.51 Total: 7.38 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -3.86 Total: -27.42 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.83 Total: -36.98 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.07 -7.91 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217505196.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.063 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds