Wall clock time and date at job start Mon Mar 30 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99917 * 2 1 4 4 H 1.48501 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47427 * 300.00064 * 3 2 1 6 6 H 1.48506 * 109.47168 * 60.00199 * 3 2 1 7 7 C 1.37881 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00381 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99764 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.34423 * 299.32866 * 9 7 2 11 11 C 1.54348 * 110.32460 * 177.21326 * 9 7 2 12 12 C 1.54348 * 102.39508 * 267.46466 * 11 9 7 13 13 C 1.51387 * 105.16542 * 333.60491 * 12 11 9 14 14 C 1.38370 * 130.31962 * 197.21020 * 13 12 11 15 15 C 1.38775 * 120.16043 * 180.02562 * 14 13 12 16 16 N 1.39676 * 120.11187 * 179.97438 * 15 14 13 17 17 C 1.38922 * 119.77465 * 359.97438 * 15 14 13 18 18 C 1.37970 * 119.85852 * 359.97438 * 17 15 14 19 19 C 1.38288 * 109.75644 * 17.20926 * 13 12 11 20 20 H 0.97003 * 120.00145 * 0.02562 * 1 2 3 21 21 H 1.08999 * 110.83732 * 149.23444 * 11 9 7 22 22 H 1.09005 * 110.98210 * 25.75836 * 11 9 7 23 23 H 1.08999 * 110.30600 * 214.68215 * 12 11 9 24 24 H 1.09002 * 110.30354 * 92.52425 * 12 11 9 25 25 H 1.08007 * 119.91681 * 0.28223 * 14 13 12 26 26 H 0.96995 * 120.00302 * 0.02562 * 16 15 14 27 27 H 0.97003 * 119.99611 * 179.97438 * 16 15 14 28 28 H 1.08001 * 120.07526 * 179.97438 * 17 15 14 29 29 H 1.08000 * 119.84102 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6276 -2.5768 0.8914 11 6 2.2349 -3.6863 -0.0692 12 6 2.3320 -3.9474 -1.5873 13 6 1.0227 -3.4475 -2.1597 14 6 0.4245 -3.7015 -3.3813 15 6 -0.7975 -3.1225 -3.6931 16 7 -1.4001 -3.3791 -4.9267 17 6 -1.4194 -2.2867 -2.7740 18 6 -0.8196 -2.0372 -1.5568 19 6 0.4011 -2.6151 -1.2470 20 1 -0.4850 0.8401 -0.0004 21 1 1.8304 -4.5561 0.4484 22 1 3.2074 -3.4118 0.3396 23 1 2.4468 -5.0139 -1.7811 24 1 3.1676 -3.3925 -2.0139 25 1 0.9079 -4.3553 -4.0922 26 1 -0.9647 -3.9632 -5.5670 27 1 -2.2545 -2.9738 -5.1427 28 1 -2.3703 -1.8331 -3.0118 29 1 -1.3031 -1.3870 -0.8427 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217505196.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:14 Heat of formation + Delta-G solvation = -0.276972 kcal Electronic energy + Delta-G solvation = -12872.238170 eV Core-core repulsion = 10758.585059 eV Total energy + Delta-G solvation = -2113.653111 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.62347 -37.42683 -34.53411 -33.72989 -31.32705 -28.74250 -28.16309 -25.60173 -23.14367 -21.29554 -21.17201 -18.52390 -17.53049 -17.10636 -16.40705 -15.87678 -15.53857 -15.10196 -14.25606 -13.99842 -13.70904 -13.63924 -13.03667 -12.81440 -12.55667 -12.40533 -12.04657 -11.93766 -11.51748 -11.14722 -11.04517 -10.53412 -10.42678 -9.27778 -8.16356 -7.80203 -6.15880 0.86381 1.14998 1.40543 1.42316 1.52701 2.45052 3.20299 3.22725 3.36474 4.02432 4.26572 4.41846 4.52041 4.67517 4.84772 4.97374 5.03593 5.20415 5.31167 5.41320 5.47931 5.57307 5.66500 5.79747 5.92500 6.12428 6.36193 6.36941 6.53758 6.85065 6.97333 7.23545 7.49442 8.99383 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.012887 C = 0.010560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.791990 B = 2172.278907 C = 2650.892462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.068 3.932 10 H -0.007 1.007 11 C -0.111 4.111 12 C -0.062 4.062 13 C -0.086 4.086 14 C -0.205 4.205 15 C 0.193 3.807 16 N -0.872 5.872 17 C -0.226 4.226 18 C -0.060 4.060 19 C -0.117 4.117 20 H 0.258 0.742 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.130 0.870 26 H 0.403 0.597 27 H 0.402 0.598 28 H 0.119 0.881 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -6.345 -7.328 9.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.050 3.950 10 H 0.011 0.989 11 C -0.148 4.148 12 C -0.099 4.099 13 C -0.087 4.087 14 C -0.228 4.228 15 C 0.090 3.910 16 N -0.414 5.414 17 C -0.249 4.249 18 C -0.079 4.079 19 C -0.120 4.120 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.148 0.852 26 H 0.233 0.767 27 H 0.231 0.769 28 H 0.137 0.863 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.569 -6.215 -7.270 9.582 hybrid contribution -0.036 1.280 -0.098 1.284 sum -0.605 -4.935 -7.368 8.889 Atomic orbital electron populations 1.69997 1.06874 1.26432 1.50658 1.25709 0.95735 1.02075 0.94978 0.85615 0.79225 0.80143 0.77304 1.19168 1.21305 1.20519 1.21451 0.92714 0.91330 1.50183 0.92646 1.18304 0.92074 0.93612 0.91017 0.98862 1.22298 0.99509 0.97375 0.95660 1.20881 0.93572 1.00514 0.94907 1.20703 0.96736 0.97273 0.93982 1.20005 0.96913 1.07981 0.97902 1.17528 0.92225 0.94212 0.87084 1.42134 1.26303 1.57522 1.15474 1.20639 1.02451 1.06078 0.95720 1.21081 0.95053 0.95380 0.96357 1.20855 0.94664 0.97249 0.99191 0.93290 0.91896 0.91465 0.89562 0.91200 0.85168 0.76747 0.76934 0.86280 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.01 9.66 21.45 0.21 -51.81 15 2 C 0.01 0.80 5.32 84.66 0.45 1.25 15 3 Si 0.95 44.56 29.54 68.60 2.03 46.58 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 7 C -0.52 -29.14 8.53 25.60 0.22 -28.92 15 8 H 0.06 3.04 7.58 -2.91 -0.02 3.02 15 9 C 0.07 3.58 2.82 -11.61 -0.03 3.55 15 10 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 15 11 C -0.11 -4.64 6.58 31.51 0.21 -4.43 15 12 C -0.06 -2.35 6.76 30.52 0.21 -2.15 15 13 C -0.09 -3.76 6.13 -19.60 -0.12 -3.88 15 14 C -0.21 -7.77 9.89 22.43 0.22 -7.55 15 15 C 0.19 7.05 6.75 38.18 0.26 7.31 15 16 N -0.87 -22.37 9.09 -51.44 -0.47 -22.84 15 17 C -0.23 -9.49 9.90 22.37 0.22 -9.27 15 18 C -0.06 -2.99 8.78 22.28 0.20 -2.80 15 19 C -0.12 -5.95 5.13 -19.55 -0.10 -6.05 15 20 H 0.26 14.20 8.31 -92.71 -0.77 13.43 15 21 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.07 2.69 7.75 -2.38 -0.02 2.68 15 23 H 0.09 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 25 H 0.13 4.02 8.06 -2.91 -0.02 4.00 15 26 H 0.40 8.19 8.84 -92.71 -0.82 7.37 15 27 H 0.40 8.67 8.84 -92.71 -0.82 7.85 15 28 H 0.12 4.40 8.06 -2.91 -0.02 4.38 15 29 H 0.12 6.61 6.00 -2.91 -0.02 6.59 15 Total: -1.00 -63.66 242.21 3.02 -60.64 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.47 Total: 20.35 kcal Atomic # 6 Polarization: -54.65 SS G_CDS: 1.73 Total: -52.92 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -0.26 Total: -74.65 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.66 3.02 -60.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217505196.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.360 kcal (2) G-P(sol) polarization free energy of solvation -63.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds