Wall clock time and date at job start Mon Mar 30 2020 02:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48500 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47299 * 300.00039 * 3 2 1 6 6 H 1.48502 * 109.47192 * 60.00212 * 3 2 1 7 7 C 1.38813 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99691 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99637 * 179.97438 * 9 7 2 11 11 C 1.52584 * 109.22206 * 154.99725 * 10 9 7 12 12 C 1.53097 * 109.95633 * 190.99752 * 11 10 9 13 13 S 1.81750 * 108.84180 * 296.97701 * 12 11 10 14 14 O 1.42094 * 109.47308 * 169.25987 * 13 12 11 15 15 C 1.81755 * 102.21981 * 53.26532 * 13 12 11 16 16 C 1.52579 * 109.23068 * 276.23725 * 10 9 7 17 17 H 0.96999 * 120.00277 * 359.97438 * 1 2 3 18 18 H 0.97000 * 120.00245 * 0.02562 * 9 7 2 19 19 H 1.08999 * 109.18819 * 35.62512 * 10 9 7 20 20 H 1.09004 * 109.38665 * 70.85467 * 11 10 9 21 21 H 1.08993 * 109.31267 * 311.09738 * 11 10 9 22 22 H 1.08997 * 109.57635 * 177.17117 * 12 11 10 23 23 H 1.08994 * 109.68210 * 56.84586 * 12 11 10 24 24 H 1.08993 * 109.57205 * 66.54310 * 15 13 12 25 25 H 1.08995 * 109.57540 * 186.92593 * 15 13 12 26 26 H 1.09004 * 109.38905 * 289.15500 * 16 10 9 27 27 H 1.08996 * 109.39049 * 48.85659 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1785 -4.7448 0.6095 12 6 2.0097 -6.0037 0.8703 13 16 2.6237 -6.6410 -0.7173 14 8 3.5923 -7.6529 -0.4788 15 6 3.4368 -5.1799 -1.4297 16 6 2.4449 -4.0137 -1.4316 17 1 -0.4850 0.8400 0.0004 18 1 0.3555 -2.3881 -0.0002 19 1 2.9619 -3.5486 0.6002 20 1 0.3680 -4.9826 -0.0795 21 1 0.7604 -4.3859 1.5500 22 1 1.3879 -6.7588 1.3510 23 1 2.8529 -5.7595 1.5164 24 1 4.3078 -4.9176 -0.8293 25 1 3.7474 -5.3968 -2.4517 26 1 1.5517 -4.2993 -1.9872 27 1 2.9048 -3.1483 -1.9086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229195203.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:30 Heat of formation + Delta-G solvation = -36.271317 kcal Electronic energy + Delta-G solvation = -11439.481072 eV Core-core repulsion = 9323.877986 eV Total energy + Delta-G solvation = -2115.603086 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -37.14264 -35.42748 -33.15184 -31.13942 -30.19170 -25.83462 -23.06386 -22.68565 -19.98400 -17.51396 -16.90059 -15.71196 -14.84436 -14.75937 -14.13377 -13.77746 -13.69899 -13.24643 -12.53495 -12.26391 -11.95306 -11.24427 -11.15240 -11.08938 -10.81433 -10.71479 -10.31230 -10.01387 -9.70834 -9.39694 -8.96050 -8.04955 -7.03240 -5.82487 -3.11688 1.78807 2.73811 3.39651 3.46041 3.47676 3.97460 4.53321 5.03328 5.18898 5.22586 5.39096 5.48723 5.65221 5.71272 5.89231 6.12051 6.16462 6.35897 6.37541 6.53462 6.82943 6.99184 7.65912 8.36215 9.47986 10.03696 10.39293 11.40025 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.075640 B = 0.008023 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.087296 B = 3489.274678 C = 3667.269204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.163 3.837 11 C -0.102 4.102 12 C -0.427 4.427 13 S 1.219 4.781 14 O -0.874 6.874 15 C -0.426 4.426 16 C -0.115 4.115 17 H 0.255 0.745 18 H 0.386 0.614 19 H 0.043 0.957 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.108 0.892 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 -10.507 -2.695 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.053 3.947 11 C -0.141 4.141 12 C -0.565 4.565 13 S 1.419 4.581 14 O -0.870 6.870 15 C -0.566 4.566 16 C -0.156 4.156 17 H 0.065 0.935 18 H 0.220 0.780 19 H 0.061 0.939 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.126 0.874 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.089 0.911 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.569 -11.291 -3.047 11.709 hybrid contribution 1.944 1.807 1.330 2.969 sum 2.514 -9.484 -1.716 9.960 Atomic orbital electron populations 1.69663 1.05071 1.25639 1.57557 1.24729 0.95509 0.97659 1.02837 0.86145 0.78799 0.84165 0.77239 1.20624 1.21773 1.21849 1.19274 0.91023 0.84092 1.42864 0.91221 1.42374 1.05819 0.99467 1.88617 1.20284 0.94688 0.86876 0.92902 1.21449 0.97952 0.92158 1.02587 1.27484 1.06832 1.05729 1.16482 1.70169 1.07964 0.82818 0.97130 1.93040 1.64708 1.45294 1.83940 1.27524 1.07880 1.12914 1.08248 1.21972 0.97123 0.95480 1.01048 0.93486 0.78025 0.93918 0.90555 0.90650 0.87371 0.89857 0.90072 0.87665 0.91102 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.06 55.49 0.72 -26.53 15 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 15 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 7 C -0.24 -6.50 9.84 -15.06 -0.15 -6.64 15 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 15 9 N -0.72 -17.07 5.11 -53.84 -0.27 -17.35 15 10 C 0.16 2.99 2.50 -68.36 -0.17 2.81 15 11 C -0.10 -1.48 5.20 -26.89 -0.14 -1.62 15 12 C -0.43 -5.46 6.44 37.21 0.24 -5.23 15 13 S 1.22 14.97 13.75 -107.50 -1.48 13.49 15 14 O -0.87 -16.05 18.14 -35.23 -0.64 -16.69 15 15 C -0.43 -5.80 6.44 37.21 0.24 -5.56 15 16 C -0.11 -1.81 5.31 -26.90 -0.14 -1.95 15 17 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 18 H 0.39 9.54 7.79 -40.82 -0.32 9.22 15 19 H 0.04 0.85 8.01 -51.93 -0.42 0.43 15 20 H 0.08 0.92 8.06 -51.93 -0.42 0.50 15 21 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.11 1.17 8.14 -51.93 -0.42 0.74 15 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 15 25 H 0.10 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.07 0.96 8.06 -51.93 -0.42 0.54 15 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 15 LS Contribution 238.98 15.07 3.60 3.60 Total: -1.00 -33.93 238.98 -6.96 -40.89 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.65 Total: 4.22 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -0.22 Total: -18.60 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.45 Total: -43.88 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.64 Total: -16.69 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 14.97 SS G_CDS: -1.48 Total: 13.49 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.93 -6.96 -40.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229195203.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.617 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds