Wall clock time and date at job start Mon Mar 30 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48500 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47299 * 300.00039 * 3 2 1 6 6 H 1.48502 * 109.47192 * 60.00212 * 3 2 1 7 7 C 1.38813 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99691 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99637 * 179.97438 * 9 7 2 11 11 C 1.52584 * 109.22206 * 154.99725 * 10 9 7 12 12 C 1.53097 * 109.95633 * 190.99752 * 11 10 9 13 13 S 1.81750 * 108.84180 * 296.97701 * 12 11 10 14 14 O 1.42094 * 109.47308 * 169.25987 * 13 12 11 15 15 C 1.81755 * 102.21981 * 53.26532 * 13 12 11 16 16 C 1.52579 * 109.23068 * 276.23725 * 10 9 7 17 17 H 0.96999 * 120.00277 * 359.97438 * 1 2 3 18 18 H 0.97000 * 120.00245 * 0.02562 * 9 7 2 19 19 H 1.08999 * 109.18819 * 35.62512 * 10 9 7 20 20 H 1.09004 * 109.38665 * 70.85467 * 11 10 9 21 21 H 1.08993 * 109.31267 * 311.09738 * 11 10 9 22 22 H 1.08997 * 109.57635 * 177.17117 * 12 11 10 23 23 H 1.08994 * 109.68210 * 56.84586 * 12 11 10 24 24 H 1.08993 * 109.57205 * 66.54310 * 15 13 12 25 25 H 1.08995 * 109.57540 * 186.92593 * 15 13 12 26 26 H 1.09004 * 109.38905 * 289.15500 * 16 10 9 27 27 H 1.08996 * 109.39049 * 48.85659 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1785 -4.7448 0.6095 12 6 2.0097 -6.0037 0.8703 13 16 2.6237 -6.6410 -0.7173 14 8 3.5923 -7.6529 -0.4788 15 6 3.4368 -5.1799 -1.4297 16 6 2.4449 -4.0137 -1.4316 17 1 -0.4850 0.8400 0.0004 18 1 0.3555 -2.3881 -0.0002 19 1 2.9619 -3.5486 0.6002 20 1 0.3680 -4.9826 -0.0795 21 1 0.7604 -4.3859 1.5500 22 1 1.3879 -6.7588 1.3510 23 1 2.8529 -5.7595 1.5164 24 1 4.3078 -4.9176 -0.8293 25 1 3.7474 -5.3968 -2.4517 26 1 1.5517 -4.2993 -1.9872 27 1 2.9048 -3.1483 -1.9086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229195203.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:29 Heat of formation + Delta-G solvation = -61.913591 kcal Electronic energy + Delta-G solvation = -11440.593005 eV Core-core repulsion = 9323.877986 eV Total energy + Delta-G solvation = -2116.715019 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 203.072 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.60203 -36.76519 -35.00721 -32.31494 -32.03357 -27.44791 -24.81069 -23.94291 -21.39551 -19.25547 -18.27642 -17.12814 -16.43358 -15.98224 -15.53439 -15.39267 -15.20215 -14.75053 -13.91810 -13.58110 -13.34069 -12.94261 -12.90898 -12.38510 -12.28531 -12.27510 -12.10722 -11.69938 -11.47694 -10.95859 -10.61840 -9.19100 -8.99371 -7.94169 -5.21369 0.72565 1.46707 1.47774 1.56532 1.66631 2.55253 2.84706 3.39032 3.75440 3.94729 4.03830 4.23700 4.40663 4.40752 4.61941 4.77040 4.92505 5.00519 5.20269 5.22368 5.48183 5.53394 5.63958 6.29647 7.36621 8.12398 8.37398 9.28994 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.075640 B = 0.008023 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.087296 B = 3489.274678 C = 3667.269204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.066 0.934 9 N -0.733 5.733 10 C 0.154 3.846 11 C -0.095 4.095 12 C -0.427 4.427 13 S 1.301 4.699 14 O -0.928 6.928 15 C -0.429 4.429 16 C -0.107 4.107 17 H 0.252 0.748 18 H 0.379 0.621 19 H 0.019 0.981 20 H 0.110 0.890 21 H 0.062 0.938 22 H 0.138 0.862 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.129 0.871 26 H 0.101 0.899 27 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -11.596 -3.230 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.262 4.262 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.372 4.372 8 H 0.084 0.916 9 N -0.373 5.373 10 C 0.045 3.955 11 C -0.134 4.134 12 C -0.566 4.566 13 S 1.501 4.499 14 O -0.924 6.924 15 C -0.568 4.568 16 C -0.147 4.147 17 H 0.061 0.939 18 H 0.212 0.788 19 H 0.037 0.963 20 H 0.128 0.872 21 H 0.081 0.919 22 H 0.156 0.844 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.147 0.853 26 H 0.119 0.881 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.509 -12.417 -3.587 12.935 hybrid contribution 2.004 2.101 1.527 3.280 sum 2.512 -10.317 -2.060 10.816 Atomic orbital electron populations 1.69783 1.06245 1.25938 1.59449 1.25413 0.96315 1.00558 1.03870 0.85211 0.78043 0.80564 0.76761 1.19783 1.21792 1.22187 1.19553 0.91103 0.85543 1.41003 0.91572 1.42519 1.05666 1.00434 1.88722 1.20579 0.94161 0.86220 0.94503 1.21352 0.98224 0.91311 1.02524 1.27497 1.06558 1.05665 1.16840 1.69631 1.04966 0.80074 0.95244 1.92929 1.66383 1.48176 1.84871 1.27549 1.06768 1.12702 1.09773 1.21760 0.98705 0.95368 0.98915 0.93948 0.78780 0.96265 0.87158 0.91905 0.84395 0.91554 0.91910 0.85305 0.88080 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.84 13.06 21.65 0.28 -56.56 15 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 15 3 Si 0.96 45.47 29.55 68.60 2.03 47.50 15 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 7 C -0.24 -12.97 9.84 84.03 0.83 -12.15 15 8 H 0.07 3.54 7.83 -2.91 -0.02 3.52 15 9 N -0.73 -34.57 5.11 -324.26 -1.66 -36.23 15 10 C 0.15 5.52 2.50 44.71 0.11 5.63 15 11 C -0.10 -2.54 5.20 30.49 0.16 -2.38 15 12 C -0.43 -9.81 6.44 72.01 0.46 -9.35 15 13 S 1.30 28.21 13.75 -56.49 -0.78 27.43 15 14 O -0.93 -32.04 18.14 -148.98 -2.70 -34.75 15 15 C -0.43 -10.80 6.44 72.01 0.46 -10.33 15 16 C -0.11 -3.18 5.31 30.49 0.16 -3.02 15 17 H 0.25 14.41 8.31 -92.71 -0.77 13.64 15 18 H 0.38 18.69 7.79 -92.71 -0.72 17.97 15 19 H 0.02 0.77 8.01 -2.39 -0.02 0.75 15 20 H 0.11 2.23 8.06 -2.38 -0.02 2.21 15 21 H 0.06 1.87 8.14 -2.39 -0.02 1.86 15 22 H 0.14 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.13 2.68 8.14 -2.39 -0.02 2.66 15 26 H 0.10 2.42 8.06 -2.39 -0.02 2.40 15 27 H 0.05 1.70 8.07 -2.39 -0.02 1.68 15 Total: -1.00 -72.90 238.98 0.26 -72.64 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.43 Total: 14.94 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 2.65 Total: -34.98 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -1.37 Total: -92.78 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -2.70 Total: -34.75 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 28.21 SS G_CDS: -0.78 Total: 27.43 kcal Total: -72.90 0.26 -72.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229195203.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.723 kcal (2) G-P(sol) polarization free energy of solvation -72.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds