Wall clock time and date at job start Mon Mar 30 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38255 * 119.87819 * 2 1 4 4 C 1.37987 * 120.22239 * 180.25470 * 3 2 1 5 5 C 1.39701 * 119.98647 * 359.49352 * 4 3 2 6 6 C 1.43195 * 120.11549 * 180.27276 * 5 4 3 7 7 N 4.80251 * 137.04767 * 359.97438 * 3 1 2 8 8 C 1.39493 * 119.76546 * 0.25292 * 5 4 3 9 9 C 1.38633 * 119.77360 * 359.97438 * 8 5 4 10 10 O 1.35762 * 119.99111 * 180.02562 * 9 8 5 11 11 C 1.34830 * 117.00194 * 354.39998 * 10 9 8 12 12 H 1.08000 * 120.00133 * 5.06200 * 11 10 9 13 13 C 1.38652 * 119.99894 * 185.06434 * 11 10 9 14 14 N 1.31551 * 119.99912 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00051 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47543 * 89.99868 * 15 13 11 17 17 H 1.48508 * 109.47087 * 210.00154 * 15 13 11 18 18 H 1.48498 * 109.47089 * 329.99594 * 15 13 11 19 19 H 1.08998 * 109.47396 * 270.25413 * 1 2 3 20 20 H 1.08999 * 109.47262 * 30.25220 * 1 2 3 21 21 H 1.08999 * 109.47325 * 150.25153 * 1 2 3 22 22 H 1.07997 * 119.88770 * 0.02562 * 3 2 1 23 23 H 1.08001 * 120.00784 * 179.77074 * 4 3 2 24 24 H 1.07994 * 120.11082 * 179.97438 * 8 5 4 25 25 H 0.97009 * 120.00105 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1988 0.0000 4 6 3.5755 1.2071 -0.0053 5 6 4.2810 0.0013 0.0000 6 6 5.7130 0.0067 0.0004 7 7 6.8490 0.0110 0.0015 8 6 3.5856 -1.2079 0.0053 9 6 2.1993 -1.2048 0.0058 10 8 1.5180 -2.3791 0.0115 11 6 2.2450 -3.5091 -0.1008 12 1 3.3238 -3.4588 -0.1075 13 6 1.6075 -4.7357 -0.2076 14 7 2.3167 -5.8382 -0.3177 15 14 -0.2585 -4.8227 -0.1968 16 1 -0.7672 -4.7169 -1.5879 17 1 -0.6903 -6.1162 0.3912 18 1 -0.8014 -3.7042 0.6152 19 1 -0.3634 0.0046 1.0276 20 1 -0.3634 0.8877 -0.5177 21 1 -0.3634 -0.8922 -0.5099 22 1 1.6519 2.1319 0.0004 23 1 4.1100 2.1456 -0.0090 24 1 4.1254 -2.1433 0.0090 25 1 1.8707 -6.6964 -0.3928 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229950609.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:50 Heat of formation + Delta-G solvation = 19.687176 kcal Electronic energy + Delta-G solvation = -12079.508748 eV Core-core repulsion = 9830.888252 eV Total energy + Delta-G solvation = -2248.620495 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57980 -37.16885 -35.87635 -32.66040 -32.19432 -29.55032 -27.00965 -25.50398 -21.97543 -21.67083 -18.78127 -18.02483 -15.84871 -15.29859 -14.89536 -14.34664 -14.06834 -13.60098 -13.31062 -12.88937 -12.65350 -12.57139 -12.40478 -12.27554 -11.67017 -11.19206 -11.05187 -10.82971 -10.80445 -10.33324 -9.60477 -8.99342 -8.32905 -7.56951 -6.52112 -4.20209 1.28115 1.99521 3.01714 3.14657 3.19217 3.31705 3.39501 4.13765 4.31626 4.35667 4.66164 4.97748 5.32013 5.47467 5.57728 5.79814 6.07833 6.11628 6.17486 6.32489 6.56251 6.75643 6.84129 7.00291 7.32220 7.61769 7.83453 7.88902 8.81619 9.39108 10.54943 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.011143 C = 0.008430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.126045 B = 2512.078419 C = 3320.491000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.129 4.129 3 C -0.082 4.082 4 C -0.152 4.152 5 C 0.001 3.999 6 C 0.270 3.730 7 N -0.443 5.443 8 C -0.170 4.170 9 C 0.155 3.845 10 O -0.205 6.205 11 C -0.396 4.396 12 H 0.107 0.893 13 C 0.067 3.933 14 N -0.873 5.873 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.257 1.257 19 H 0.063 0.937 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.125 0.875 23 H 0.119 0.881 24 H 0.143 0.857 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 10.006 0.450 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.131 4.131 3 C -0.100 4.100 4 C -0.174 4.174 5 C -0.003 4.003 6 C -0.044 4.044 7 N -0.119 5.119 8 C -0.192 4.192 9 C 0.102 3.898 10 O -0.109 6.109 11 C -0.471 4.471 12 H 0.124 0.876 13 C -0.138 4.138 14 N -0.510 5.510 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.181 1.181 19 H 0.082 0.918 20 H 0.078 0.922 21 H 0.088 0.912 22 H 0.143 0.857 23 H 0.137 0.863 24 H 0.160 0.840 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.072 9.681 0.449 10.167 hybrid contribution -0.912 -0.351 -0.022 0.978 sum -3.984 9.330 0.427 10.154 Atomic orbital electron populations 1.20564 0.91166 1.02294 1.01838 1.19287 0.96147 0.90582 1.07071 1.20490 0.93165 0.96495 0.99874 1.20622 0.94017 0.95644 1.07092 1.15756 0.83518 0.94720 1.06263 1.25948 0.92910 0.92687 0.92888 1.81154 1.12304 1.08486 1.09967 1.21273 0.94096 0.97436 1.06383 1.18672 0.89661 0.86598 0.94847 1.83594 1.35785 1.11769 1.79790 1.20773 0.92695 0.81407 1.52203 0.87563 1.24475 1.00444 0.93572 0.95303 1.69645 1.36709 0.98169 1.46463 0.86194 0.83350 0.78182 0.79290 1.19737 1.20714 1.18072 0.91823 0.92248 0.91240 0.85711 0.86339 0.83982 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.78 36.00 0.35 -1.16 15 2 C -0.13 -2.20 5.90 -104.35 -0.62 -2.82 15 3 C -0.08 -1.17 9.67 -39.67 -0.38 -1.56 15 4 C -0.15 -2.25 9.75 -39.13 -0.38 -2.63 15 5 C 0.00 0.02 5.73 -106.96 -0.61 -0.60 15 6 C 0.27 4.82 15.33 -22.47 -0.34 4.47 15 7 N -0.44 -8.44 18.54 41.84 0.78 -7.66 15 8 C -0.17 -3.39 8.87 -38.97 -0.35 -3.74 15 9 C 0.16 3.21 6.61 -39.17 -0.26 2.95 15 10 O -0.20 -4.91 7.62 0.01 0.00 -4.91 15 11 C -0.40 -10.47 9.94 30.89 0.31 -10.16 15 12 H 0.11 2.90 5.43 -52.49 -0.29 2.61 15 13 C 0.07 1.77 5.49 -17.52 -0.10 1.68 15 14 N -0.87 -24.33 13.96 55.48 0.77 -23.55 15 15 Si 0.90 20.36 28.62 -169.99 -4.86 15.50 15 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 18 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 19 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 20 H 0.06 0.70 8.08 -51.93 -0.42 0.28 15 21 H 0.07 1.15 7.52 -51.93 -0.39 0.76 15 22 H 0.12 1.37 8.06 -52.49 -0.42 0.94 15 23 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 24 H 0.14 3.05 5.63 -52.49 -0.30 2.75 15 25 H 0.28 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 236.38 15.07 3.56 3.56 Total: -1.00 -27.64 236.38 -3.93 -31.57 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -1.79 Total: -0.94 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.38 Total: -13.56 kcal Atomic # 7 Polarization: -32.76 SS G_CDS: 1.55 Total: -31.21 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: 0.00 Total: -4.91 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.86 Total: 15.50 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.64 -3.93 -31.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229950609.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.257 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds